Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_C15
(570 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161 71 5e-13
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764... 62 3e-10
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129 62 3e-10
07_01_1001 - 8460467-8460799 46 2e-05
07_03_0321 + 16757414-16757743 44 6e-05
01_06_0098 - 26416768-26416998 29 2.0
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 28 4.6
12_01_0090 + 717524-719080 28 6.0
12_01_0141 - 1091579-1091983 27 8.0
11_01_0139 - 1159748-1160173,1160229-1160301,1161600-1161877 27 8.0
>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
Length = 113
Score = 71.3 bits (167), Expect = 5e-13
Identities = 30/58 (51%), Positives = 46/58 (79%)
Frame = +3
Query: 132 GGKXTPAAADVEKXLSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 305
GG +P+A D++ L SVG+EA+ E+L+ +++EL GKD+ ++IAAGREK +S+P GGG
Sbjct: 13 GGNTSPSADDIKNILESVGVEANDERLEFLLSELEGKDITEVIAAGREKFASVPSGGG 70
>02_04_0074 -
19474786-19474812,19475174-19475400,19476362-19476496,
19478662-19479193
Length = 306
Score = 62.1 bits (144), Expect = 3e-10
Identities = 27/71 (38%), Positives = 44/71 (61%)
Frame = +3
Query: 93 KMRYXXXXXXXXXGGKXTPAAADVEKXLSSVGIEADGEKLKKVITELNGKDVEQLIAAGR 272
+M++ G P+A D+ L SVG E D K++ ++++L GKD+ ++IA+GR
Sbjct: 193 RMKFISAYLLATLAGNPNPSAEDLTTILESVGAEVDHGKMELLLSQLAGKDITEIIASGR 252
Query: 273 EKLSSMPVGGG 305
EK +S+P GGG
Sbjct: 253 EKFASVPCGGG 263
>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
Length = 114
Score = 62.1 bits (144), Expect = 3e-10
Identities = 27/70 (38%), Positives = 43/70 (61%)
Frame = +3
Query: 96 MRYXXXXXXXXXGGKXTPAAADVEKXLSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 275
M++ G +P A D+ L SVG E D K++ ++++++GKD+ +LIA GRE
Sbjct: 1 MKFISAYLMAYLAGNSSPTAEDLTTILESVGCEIDNAKMELLLSQVSGKDITELIACGRE 60
Query: 276 KLSSMPVGGG 305
K +S+P GGG
Sbjct: 61 KFASVPSGGG 70
>07_01_1001 - 8460467-8460799
Length = 110
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/68 (33%), Positives = 36/68 (52%)
Frame = +3
Query: 96 MRYXXXXXXXXXGGKXTPAAADVEKXLSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 275
MR+ GG +P DV L +VG + D +KL + ++ GKD+ +++AAG E
Sbjct: 1 MRFVAAYLMATIGGNASPTKDDVRAILGAVGADVDEDKLGYLFDQVAGKDLSEILAAGSE 60
Query: 276 KLSSMPVG 299
L+ VG
Sbjct: 61 MLAFGGVG 68
>07_03_0321 + 16757414-16757743
Length = 109
Score = 44.4 bits (100), Expect = 6e-05
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = +3
Query: 96 MRYXXXXXXXXXGGKXTPAAADVEKXLSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 275
MR+ GG +P DV L +VG + D +KL + ++ GKD+ +++AAG E
Sbjct: 1 MRFVAAYLMATIGGNASPTKDDVRAILGAVGADIDEDKLGYLFDQVAGKDLAEILAAGSE 60
Query: 276 KLS 284
L+
Sbjct: 61 MLA 63
>01_06_0098 - 26416768-26416998
Length = 76
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 147 PAAADVEKXLSSVGIEADGEKLKKVITELNGKD 245
P V K + +V IEAD + K ++ L GKD
Sbjct: 16 PPPPAVVKIIETVHIEADSAEFKSIVQRLTGKD 48
>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
Length = 883
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 205 SPSASIPTELRXFSTSAAAGVXLPPSTASKXAA 107
+P+ IPT F T A V +PP+TA AA
Sbjct: 533 APAPPIPTPSMPFPTVPAPPVTVPPATAPSMAA 565
>12_01_0090 + 717524-719080
Length = 518
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -3
Query: 301 PPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELRXF 167
PP + S P ++ S+S SS + + + S S+PT L F
Sbjct: 60 PPAVLSPSLVCPVIVAFSSSQAPSSALLLFNHASSCSLPTPLPTF 104
>12_01_0141 - 1091579-1091983
Length = 134
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 192 EADGEKLKKVITELNGKDVEQLIA 263
E DG+K KKV+ L ++VE+L++
Sbjct: 30 EEDGKKRKKVVRRLGKEEVERLLS 53
>11_01_0139 - 1159748-1160173,1160229-1160301,1161600-1161877
Length = 258
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +3
Query: 198 DGEKLKKVITELNGKDVEQLIA 263
DG+K+KKV+ L ++VE+L++
Sbjct: 36 DGKKMKKVVKRLGKEEVERLLS 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,719,387
Number of Sequences: 37544
Number of extensions: 161669
Number of successful extensions: 446
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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