Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_C14
(491 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0783 + 19607871-19607951,19608027-19608074,19608719-196088... 100 5e-22
08_01_1077 - 11027732-11027839,11028346-11028477,11029722-110298... 30 1.2
02_04_0573 + 23985468-23987054 29 2.7
06_03_0570 - 22363197-22363588,22363755-22366782 28 3.5
01_01_0362 - 2843659-2844468,2844669-2844699,2844824-2844903,284... 27 6.2
03_02_0664 - 10262690-10263273,10263594-10263726,10263826-102640... 27 8.2
02_05_0161 + 26384079-26384086,26386173-26386226,26386376-263864... 27 8.2
01_05_0340 - 21139885-21139978,21140169-21140272,21140379-211405... 27 8.2
01_01_0565 - 4159946-4160042,4160140-4160243,4160378-4160533,416... 27 8.2
>04_03_0783 +
19607871-19607951,19608027-19608074,19608719-19608806,
19608887-19608930,19609016-19609099
Length = 114
Score = 100 bits (240), Expect = 5e-22
Identities = 49/86 (56%), Positives = 61/86 (70%)
Frame = +3
Query: 84 TPKXLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTVSCFVLGVCLRLQVNP 263
TP LKIID Y+ + TA+IQ Y +VG+FPFNSFLSG +S + VL VCLR+QVN
Sbjct: 22 TPTNLKIIDLYVVFAVATALIQVVYMGIVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNK 81
Query: 264 ENKNEFQGLSAERGFADFIFAHLVLH 341
+NK EF+ L ER FADF+ +LVLH
Sbjct: 82 DNK-EFKDLPPERAFADFVLCNLVLH 106
>08_01_1077 -
11027732-11027839,11028346-11028477,11029722-11029802,
11029911-11030063,11030167-11030281,11030282-11030927,
11031409-11031613,11031696-11031758
Length = 500
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = -2
Query: 268 FSGLTCSRRHTPRTKQLTVDIKPLKKELNGK 176
FS L C RH+P K+LT+ ++ +++ NG+
Sbjct: 373 FSRLFCLLRHSPELKELTLKLEVERQDHNGE 403
>02_04_0573 + 23985468-23987054
Length = 528
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Frame = -2
Query: 304 PRSALSPWNSFL----FSGLTCSRRHTPRTKQLTV 212
P A+S WN+ + ++G++CSRRH R L +
Sbjct: 46 PTQAMSSWNASVPFCQWTGVSCSRRHPGRVTALNL 80
>06_03_0570 - 22363197-22363588,22363755-22366782
Length = 1139
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = -2
Query: 328 CANMKSAKPRSALSPWNSFL----FSGLTCSRRHTPRTKQLTVDIKPLKKELNGKVP 170
C + + +L+ WN L + G+TC +RH R L ++ +LNG +P
Sbjct: 47 CLKSRLSNNARSLASWNESLQFCTWPGITCGKRHESRVTALHLE----SLDLNGHLP 99
>01_01_0362 -
2843659-2844468,2844669-2844699,2844824-2844903,
2846680-2847831
Length = 690
Score = 27.5 bits (58), Expect = 6.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 197 KWFYIYSKLLCSWSVPS 247
++FY YS CSWS P+
Sbjct: 215 EYFYSYSAATCSWSAPT 231
>03_02_0664 -
10262690-10263273,10263594-10263726,10263826-10264016,
10264094-10264219,10264537-10264616,10265312-10265375,
10265470-10265554
Length = 420
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 278 VPRAECRTWLCRFHICTSGVAYCCYQFHRIK 370
V AE W+ R I + G+AYC H++K
Sbjct: 227 VREAEKLDWMTRLRI-SMGIAYCLEHMHQLK 256
>02_05_0161 +
26384079-26384086,26386173-26386226,26386376-26386448,
26386775-26386822,26386906-26386953,26387990-26388061,
26388156-26388311,26388428-26388531,26388628-26388724
Length = 219
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 114 YLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTV 218
YLF + L G CL+ F +S+L +IST+
Sbjct: 23 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTI 57
>01_05_0340 -
21139885-21139978,21140169-21140272,21140379-21140534,
21140622-21140693,21140782-21140829,21140923-21140970,
21141807-21141879,21142333-21142346
Length = 202
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 114 YLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTV 218
YLF + L G CL+ F +S+L +IST+
Sbjct: 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTI 41
>01_01_0565 -
4159946-4160042,4160140-4160243,4160378-4160533,
4160629-4160700,4161796-4161843,4161923-4161970,
4162295-4162367,4163188-4163201
Length = 203
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 114 YLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTV 218
YLF + L G CL+ F +S+L +IST+
Sbjct: 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTI 41
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,878,942
Number of Sequences: 37544
Number of extensions: 183636
Number of successful extensions: 446
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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