Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_C14
         (491 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40808| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_55318| Best HMM Match : zf-DHHC (HMM E-Value=2.5e-12)               28   4.8  
SB_53412| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_37853| Best HMM Match : REJ (HMM E-Value=0.00025)                   27   8.4  
SB_12150| Best HMM Match : DUF590 (HMM E-Value=0)                      27   8.4  

>SB_40808| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 301 RSALSPWNSFLFSGLTCSRRHTPRTKQLTVDIKPLKKE 188
           R+ L+ W   LF  L CSR      K++  + KP+ K+
Sbjct: 3   RAVLACWPLVLFLALFCSRARAENDKRIYTNKKPVYKK 40


>SB_55318| Best HMM Match : zf-DHHC (HMM E-Value=2.5e-12)
          Length = 341

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 114 YLFYIFLTAVIQFGYCCLVGTFPF 185
           Y +   L AV+  GY C +  FPF
Sbjct: 170 YYYSFLLQAVVGLGYACYLAIFPF 193


>SB_53412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1459

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -2

Query: 355  LITTICNTRCANMKSAKPRSALSPWNSFLFSGLTCSRRHTPRTKQLTVD 209
            L+ TIC+   A +K  K   +  P     ++  TC+R +    KQ+T+D
Sbjct: 1136 LMCTICSKTFATLKFLKKHVSRKPHEDKPYNSTTCNRAY---RKQITLD 1181


>SB_37853| Best HMM Match : REJ (HMM E-Value=0.00025)
          Length = 2182

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +2

Query: 149  IRLLLPCRHFPI*FFLKWFYIYSKLLCSWSVPSATS 256
            I + +P R+ P+  F    Y++ K+  +WS    T+
Sbjct: 1838 INMKIPLRNMPVNDFTPMCYVWDKVSSTWSFTDVTT 1873


>SB_12150| Best HMM Match : DUF590 (HMM E-Value=0)
          Length = 393

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 117 LFYIFLTAVIQFGYCCL-VGTFPFNSFLS 200
           LFY +L  VIQFG+  + V  FP   F +
Sbjct: 142 LFYEYLEMVIQFGFITIFVTAFPLGPFFA 170


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,168,663
Number of Sequences: 59808
Number of extensions: 241222
Number of successful extensions: 621
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)