Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_C14
         (491 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X89080-1|CAA61451.1|  113|Caenorhabditis elegans dad-1 protein.       133   8e-32
AF039713-4|AAB96727.1|  113|Caenorhabditis elegans Dad (defender...   133   8e-32
Z79600-9|CAJ85761.1|  110|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z79600-8|CAJ85760.1|  147|Caenorhabditis elegans Hypothetical pr...    29   1.4  
U40800-2|AAA81489.2|  137|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z69884-8|CAA93752.2|  582|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AY090484-1|AAM11893.1|  582|Caenorhabditis elegans low-affinity ...    28   4.2  
AC025715-3|AAU87815.1|  534|Caenorhabditis elegans Hypothetical ...    28   4.2  
U39666-2|AAA80411.2|  835|Caenorhabditis elegans Oligopeptide tr...    27   7.4  
AL110477-5|CAB54329.1|  314|Caenorhabditis elegans Hypothetical ...    27   7.4  
AF000418-1|AAC39119.1|  796|Caenorhabditis elegans low-affinity ...    27   7.4  
AC199171-2|ABO33268.1|  297|Caenorhabditis elegans Hypothetical ...    27   7.4  
U41279-3|AAK31422.1|  210|Caenorhabditis elegans Helix loop heli...    27   9.8  
U00066-9|AAA50743.3|  780|Caenorhabditis elegans Mediator protei...    27   9.8  
U00066-8|AAM54164.1|  777|Caenorhabditis elegans Mediator protei...    27   9.8  
AF078788-7|AAC26958.1|  227|Caenorhabditis elegans Hypothetical ...    27   9.8  

>X89080-1|CAA61451.1|  113|Caenorhabditis elegans dad-1 protein.
          Length = 113

 Score =  133 bits (321), Expect = 8e-32
 Identities = 62/103 (60%), Positives = 75/103 (72%)
 Frame = +3

Query: 33  SSLTAVIPKLYQASTTXTPKXLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFIS 212
           + +  V+ KL+      T   LKIIDAY+ YI  T + QF YC LVGTFPFNSFLSGFIS
Sbjct: 3   AQVVPVLSKLFDDYQKTTSSKLKIIDAYMTYILFTGIFQFIYCLLVGTFPFNSFLSGFIS 62

Query: 213 TVSCFVLGVCLRLQVNPENKNEFQGLSAERGFADFIFAHLVLH 341
           TV+ FVL  CLR+QVN EN++EF  +S ER FADFIFA+L+LH
Sbjct: 63  TVTSFVLASCLRMQVNQENRSEFTAVSTERAFADFIFANLILH 105


>AF039713-4|AAB96727.1|  113|Caenorhabditis elegans Dad (defender
           against apoptoticdeath) homolog protein 1 protein.
          Length = 113

 Score =  133 bits (321), Expect = 8e-32
 Identities = 62/103 (60%), Positives = 75/103 (72%)
 Frame = +3

Query: 33  SSLTAVIPKLYQASTTXTPKXLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFIS 212
           + +  V+ KL+      T   LKIIDAY+ YI  T + QF YC LVGTFPFNSFLSGFIS
Sbjct: 3   AQVVPVLSKLFDDYQKTTSSKLKIIDAYMTYILFTGIFQFIYCLLVGTFPFNSFLSGFIS 62

Query: 213 TVSCFVLGVCLRLQVNPENKNEFQGLSAERGFADFIFAHLVLH 341
           TV+ FVL  CLR+QVN EN++EF  +S ER FADFIFA+L+LH
Sbjct: 63  TVTSFVLASCLRMQVNQENRSEFTAVSTERAFADFIFANLILH 105


>Z79600-9|CAJ85761.1|  110|Caenorhabditis elegans Hypothetical
           protein F59C6.14b protein.
          Length = 110

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 90  KXLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFIS 212
           K +  IDA +F   +T ++   YC   G F    +L GF+S
Sbjct: 70  KMIVFIDA-VFSAIITLMLLIAYCFFAGGFNGKQYLDGFVS 109


>Z79600-8|CAJ85760.1|  147|Caenorhabditis elegans Hypothetical
           protein F59C6.14a protein.
          Length = 147

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 90  KXLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFIS 212
           K +  IDA +F   +T ++   YC   G F    +L GF+S
Sbjct: 107 KMIVFIDA-VFSAIITLMLLIAYCFFAGGFNGKQYLDGFVS 146


>U40800-2|AAA81489.2|  137|Caenorhabditis elegans Hypothetical
           protein D2096.5 protein.
          Length = 137

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +3

Query: 96  LKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTVSCFV 230
           + ++  ++F +F + V       LV TF FN FLS  +STV  FV
Sbjct: 6   VSLLSVFIFLLFSSEVE-----ALVTTFHFNGFLSCGLSTVDFFV 45


>Z69884-8|CAA93752.2|  582|Caenorhabditis elegans Hypothetical
           protein F31F6.6 protein.
          Length = 582

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
 Frame = +3

Query: 9   CKINQITMSSLTA--VIPKLYQASTTXTPKXLKIIDAYLFYIFLTAVIQFGYCCLVGTFP 182
           C I  +T++++ +  VI  ++        + L+I D   F + +T    F +   V T P
Sbjct: 447 CIIISVTLTNVCSNTVIASIFIPIVAELARSLEI-DPLNFMLPVTISASFAFLLPVATPP 505

Query: 183 FNS--FLSGFISTVSCFVLGVCLRL 251
            N+  F SG++     FV G+C+ L
Sbjct: 506 -NAIVFSSGYLKVFDMFVSGLCVTL 529


>AY090484-1|AAM11893.1|  582|Caenorhabditis elegans low-affinity
           dicarboxylate transporterINDY1 protein.
          Length = 582

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
 Frame = +3

Query: 9   CKINQITMSSLTA--VIPKLYQASTTXTPKXLKIIDAYLFYIFLTAVIQFGYCCLVGTFP 182
           C I  +T++++ +  VI  ++        + L+I D   F + +T    F +   V T P
Sbjct: 447 CIIISVTLTNVCSNTVIASIFIPIVAELARSLEI-DPLNFMLPVTISASFAFLLPVATPP 505

Query: 183 FNS--FLSGFISTVSCFVLGVCLRL 251
            N+  F SG++     FV G+C+ L
Sbjct: 506 -NAIVFSSGYLKVFDMFVSGLCVTL 529


>AC025715-3|AAU87815.1|  534|Caenorhabditis elegans Hypothetical
           protein Y38F2AR.5 protein.
          Length = 534

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 19/75 (25%), Positives = 30/75 (40%)
 Frame = -2

Query: 340 CNTRCANMKSAKPRSALSPWNSFLFSGLTCSRRHTPRTKQLTVDIKPLKKELNGKVPTRQ 161
           C+T C  +   + +S    WN+F    L  S      +  L V+  P+KK      P   
Sbjct: 304 CSTDCKRIVEQRVKSVHKDWNNFSRLSLADSDIVRTSSNPLKVEYPPIKKFGGTNAPKSN 363

Query: 160 Q*PNCMTAVRKI*KR 116
           +  N     R+I K+
Sbjct: 364 R--NTQKTARQIPKK 376


>U39666-2|AAA80411.2|  835|Caenorhabditis elegans Oligopeptide
           transporter protein 2 protein.
          Length = 835

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 171 GTFPFNSFLSGFISTVSCFVLGVCLRLQVNPENKN 275
           G+ P   +L  +++T  C +   CL LQ    NKN
Sbjct: 271 GSTPKEHWLLHYLTTHDCALDAKCLELQAEKRNKN 305


>AL110477-5|CAB54329.1|  314|Caenorhabditis elegans Hypothetical
           protein Y113G7B.7 protein.
          Length = 314

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 188 IKWESADKATVAELYDRSKENIEKVCINYFK 96
           I +   D+    +LY+RS++ IEK  +N  K
Sbjct: 83  ISYTDRDEGCTVKLYNRSEKYIEKTALNAMK 113


>AF000418-1|AAC39119.1|  796|Caenorhabditis elegans low-affinity
           peptide transporter protein.
          Length = 796

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 171 GTFPFNSFLSGFISTVSCFVLGVCLRLQVNPENKN 275
           G+ P   +L  +++T  C +   CL LQ    NKN
Sbjct: 232 GSTPKEHWLLHYLTTHDCALDAKCLELQAEKRNKN 266


>AC199171-2|ABO33268.1|  297|Caenorhabditis elegans Hypothetical
           protein VY35H6BL.1 protein.
          Length = 297

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 340 CNTRCANMKSAKPRSALSPWNSFLFSGLTCSRRHTPRTKQ-LTVDIKPLKK 191
           C+T C  +   + +S    WN+  FS L+ +     RT   L V+  P+KK
Sbjct: 91  CSTDCKRIVEQRVKSVHKDWNN--FSRLSLADSDIVRTSNPLKVEYPPIKK 139


>U41279-3|AAK31422.1|  210|Caenorhabditis elegans Helix loop helix
           protein 26 protein.
          Length = 210

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 140 GHTIRLLLPCRHFPI*FFLKWFYIYSKLL 226
           G +I   +PC  FPI  FL  F +YS L+
Sbjct: 137 GKSITCTVPCLPFPILPFLPVFPVYSPLV 165


>U00066-9|AAA50743.3|  780|Caenorhabditis elegans Mediator protein
           15, isoform a protein.
          Length = 780

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 9   CKINQITMSSLTAVIPKLYQASTTXTPKXLKIIDAYLF 122
           CKI       L  V+P  Y A      + +  +DAYL+
Sbjct: 685 CKIRNQQFPPLRLVVPTTYPAGNVTVDRAVIDLDAYLY 722


>U00066-8|AAM54164.1|  777|Caenorhabditis elegans Mediator protein
           15, isoform b protein.
          Length = 777

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 9   CKINQITMSSLTAVIPKLYQASTTXTPKXLKIIDAYLF 122
           CKI       L  V+P  Y A      + +  +DAYL+
Sbjct: 682 CKIRNQQFPPLRLVVPTTYPAGNVTVDRAVIDLDAYLY 719


>AF078788-7|AAC26958.1|  227|Caenorhabditis elegans Hypothetical
           protein ZC190.8 protein.
          Length = 227

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 141 VIQFGYCCLVGTFPFNSFLSGFISTVSCFVLGVCLRLQVNPENK 272
           +IQ     ++G F    F + FI  ++ F+LG CL ++  P +K
Sbjct: 12  LIQKSEYFIIGVFLI--FRTAFIFIITGFILGYCLHVKDPPSDK 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,133,601
Number of Sequences: 27780
Number of extensions: 182208
Number of successful extensions: 561
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)