Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_C12
(815 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein... 75 2e-14
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 64 2e-11
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 34 0.021
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 27 4.2
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c... 27 4.2
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 26 5.6
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 26 7.4
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S... 26 7.4
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 25 9.7
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 25 9.7
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M... 25 9.7
>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
Stg1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 74.5 bits (175), Expect = 2e-14
Identities = 53/145 (36%), Positives = 75/145 (51%), Gaps = 4/145 (2%)
Frame = +2
Query: 89 KSVLTWISDVLGAPLPNGAYEXV--LRDGVILCKLANKLAPGSVKKIQERGTNFQLMENI 262
K WI + L L N + + L+ GVILC++ K A G+ + +E F MENI
Sbjct: 7 KEAREWIEETLHTKL-NAQLDLLDQLQSGVILCRIC-KEALGANIRYKESNMPFVQMENI 64
Query: 263 QRF-QAAIKKYGVPEEEIFQTADLFERRNIPQVTLCLYALGRITQKHPEFTGPQLGPKMA 439
F A + VP +++FQT+DLFERRN QV +++ R K LGPK+A
Sbjct: 65 SAFINYAQQVVHVPSQDMFQTSDLFERRNDEQVLRSIHSFSRYAAKMFPGKVRGLGPKLA 124
Query: 440 DKNERTFTEEQLRAHNAELN-LQMG 511
+K R F+ +Q R +N LQ G
Sbjct: 125 EKKPRVFSAQQQREFREGVNSLQYG 149
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 64.5 bits (150), Expect = 2e-11
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Frame = +2
Query: 104 WISDVLGAPL-PNGAYEXVLRDGVILCKLANKLAPGSVKKI-QERGTNFQLMENIQRFQA 277
WI + LG L P +E LR+GV+L L K P + KI F+ +NI +F
Sbjct: 50 WIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLD 109
Query: 278 AIKKYGVPEEEIFQTADLFERRNIPQVTLCLYAL 379
I G+PE F+ D++E +N+P+V C++AL
Sbjct: 110 FIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHAL 143
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 34.3 bits (75), Expect = 0.021
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +2
Query: 158 LRDGVILCKLANKLAPGSVKKIQERGTNFQLMEN----IQRFQAAIKKYGVPEEEIFQTA 325
L +G +LC+LA K P + R +Q+ E + F + G+ F+T
Sbjct: 92 LVNGKVLCQLAFKYYPKLASNWKPR---YQISERNTVYLNAFFHFLDFIGMFTPFRFETK 148
Query: 326 DLFERRNIPQVTLCLYAL 379
DL R NIP+V CL+AL
Sbjct: 149 DLVRRFNIPKVIYCLHAL 166
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 26.6 bits (56), Expect = 4.2
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +3
Query: 216 KKYKREGPTSSSWR--TFKGSKRQSRNTEYQKKK 311
+KY R+ PT SS R T GS ++ + KKK
Sbjct: 1215 RKYNRKAPTKSSTRQTTLDGSISNTKKSSRTKKK 1248
>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 801
Score = 26.6 bits (56), Expect = 4.2
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 45 FACTQCLPVNKXQVTSRFSLGSLM-FWERRYQMAHTKXCLGTV*SFAN 185
F C CL + V F + +L +ER+Y+ +H K L + F+N
Sbjct: 118 FTCENCL---QEGVAYTFEMVALQCMYERKYRQSHEKATLADLEQFSN 162
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 255 SMSWKLVPLSCIFFTDPGANLLANLQRITPSLSTXSYAPFG 133
S+++KL + DP LAN +++ SLS +Y P G
Sbjct: 33 SLAYKLYSMLRSLKLDPHFMELANPKKVDSSLSYENYQPIG 73
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = +2
Query: 395 KHPEFTGPQLGPKMADKNERTFTEEQLRAHNAELNLQMGFNKGASQSGHGGF 550
+ F G G + + + R R N G++ G S SG+GGF
Sbjct: 565 RESSFGGNGRGGRYSGRGGRGGNAYGARDFRRPTNSSSGYSSGPSYSGYGGF 616
>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
Sad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 504 KWASIRAPPSPVMVASVTPATCKLLLNFSQYF 599
++ IR+PP+ V + S+TP NF Q +
Sbjct: 46 RYTKIRSPPTRVSIESITPKQRFPAPNFEQAY 77
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 596 FSTLISVFVHGRIWLNDFFTF 658
FST I VHG WL D + F
Sbjct: 140 FSTPIPHMVHGIPWLQDLYIF 160
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 25.4 bits (53), Expect = 9.7
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -3
Query: 366 HNVTWGMLRLSKRSAVWN 313
HN WG R + +A+WN
Sbjct: 491 HNFVWGRFRELEHAAMWN 508
>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 535
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 286 LDCRLEPLNVLHELEVGPSLLYFFH 212
LD LEPL LHE + L+FF+
Sbjct: 238 LDAYLEPLVHLHEYSRRSNTLFFFY 262
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,662,091
Number of Sequences: 5004
Number of extensions: 83055
Number of successful extensions: 187
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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