Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_C12
(815 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.) 95 5e-20
SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.) 89 5e-18
SB_18673| Best HMM Match : CH (HMM E-Value=2.5e-05) 73 3e-13
SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10) 72 6e-13
SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 2e-10
SB_23839| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 3e-07
SB_18675| Best HMM Match : NUMOD3 (HMM E-Value=8) 48 1e-05
SB_36121| Best HMM Match : CH (HMM E-Value=0.0017) 46 3e-05
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 4e-05
SB_20280| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_28994| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 8e-04
SB_2620| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.052
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05) 35 0.091
SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09) 34 0.12
SB_50497| Best HMM Match : CH (HMM E-Value=0.0084) 31 1.5
SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22) 30 2.0
SB_15403| Best HMM Match : CH (HMM E-Value=0) 30 2.0
SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12) 29 6.0
SB_34659| Best HMM Match : WD40 (HMM E-Value=1.1e-34) 29 6.0
SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 95.5 bits (227), Expect = 5e-20
Identities = 63/163 (38%), Positives = 89/163 (54%), Gaps = 8/163 (4%)
Frame = +2
Query: 104 WISDVLGAPL--PNGAYEXV---LRDGVILCKLANKLAPGSVKKIQERGTNFQLMENIQR 268
WI VLG + NG + V L+DG +LC+LAN+L G KI ++ F+ MENI
Sbjct: 439 WIDTVLGESIFGENGGVDTVHQTLKDGQVLCRLANRL--GGDLKINQQKMPFKQMENIGN 496
Query: 269 FQAAIKK-YGVPEEEIFQTADLFERRNIPQVTLCLYALGRITQKHPEFTGPQLGPKMADK 445
F + I+ GV + ++FQT DL+E+ N+ V C++A+GR + PQLGPK + K
Sbjct: 497 FLSFIENNLGVAKNDLFQTVDLYEKSNMWNVICCIHAVGRRAYSLGKDV-PQLGPKESTK 555
Query: 446 NERTFTEEQLRAHNAELN-LQMG-FNKGASQSGHGGFGNTRHM 568
N R FTE QL +N QMG K + + FG R +
Sbjct: 556 NPRQFTERQLNEGKTIINSFQMGPAAKNVATASGQSFGRQRQI 598
>SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 88.6 bits (210), Expect = 5e-18
Identities = 54/131 (41%), Positives = 75/131 (57%), Gaps = 5/131 (3%)
Frame = +2
Query: 104 WISDVLGAPLPNGA-----YEXVLRDGVILCKLANKLAPGSVKKIQERGTNFQLMENIQR 268
WI +LG + G VL+DG +LC++ANKL G++K I F++MEN +
Sbjct: 75 WIEGILGERVFGGKTGADDVHEVLKDGQVLCRVANKLG-GNIK-INSSKMAFKMMENTGK 132
Query: 269 FQAAIKKYGVPEEEIFQTADLFERRNIPQVTLCLYALGRITQKHPEFTGPQLGPKMADKN 448
F GVP+ ++FQT DL+E++N+P V ++ALGR + T LGPK A N
Sbjct: 133 FLEFCDTIGVPKTDMFQTVDLYEKQNMPGVINGIHALGRKAHSTGK-TCLALGPKEASAN 191
Query: 449 ERTFTEEQLRA 481
R FTEEQ RA
Sbjct: 192 PREFTEEQRRA 202
>SB_18673| Best HMM Match : CH (HMM E-Value=2.5e-05)
Length = 195
Score = 72.9 bits (171), Expect = 3e-13
Identities = 54/131 (41%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Frame = +2
Query: 104 WISDVLGAPLPNGA-----YEXVLRDGVILCKLANKLAPGSVKKIQERGTNFQLMENIQR 268
WI VLG + GA + VL+DG IL +LA KL G+ K+ E+ F+ MENI
Sbjct: 33 WIEAVLGEKVFGGAEGPDDVQKVLKDGKILARLAIKL--GAKIKVNEQNMPFKQMENIGN 90
Query: 269 FQAAIKKYGVPEEEIFQTADLFERRNIPQVTLCLYALGRITQKHPEFTGPQLGPKMADKN 448
F + GV + FQTADL++ N +T C Q + P LGPK A+ N
Sbjct: 91 FLSHCGHLGVASGDQFQTADLYDNAN---MTSC--------QLIKDLDIPTLGPKEAEAN 139
Query: 449 ERTFTEEQLRA 481
R FTEEQLRA
Sbjct: 140 VREFTEEQLRA 150
>SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10)
Length = 172
Score = 71.7 bits (168), Expect = 6e-13
Identities = 32/72 (44%), Positives = 47/72 (65%)
Frame = +2
Query: 146 YEXVLRDGVILCKLANKLAPGSVKKIQERGTNFQLMENIQRFQAAIKKYGVPEEEIFQTA 325
++ L+ GV+LCKLAN + PG++KKI NF +MENI+ F ++ GV + F T
Sbjct: 90 FQNTLKSGVVLCKLANAIQPGAIKKINNAKMNFMMMENIENFCNFVQTKGVASQYQFVTI 149
Query: 326 DLFERRNIPQVT 361
DLFE +N+ QV+
Sbjct: 150 DLFEGKNMHQVS 161
>SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 63.7 bits (148), Expect = 2e-10
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = +2
Query: 134 PNGAYEXVLRDGVILCKLANKLAPGSVKKIQERGTNFQLMENIQRFQAAIKK-YGVPEEE 310
P + LR GVILCK+ANK+ ++ KI E +F + ENI +F ++ G+
Sbjct: 301 PGETFAEPLRSGVILCKIANKIKSNAIPKIGESNKSFVMQENISKFLDFCERVLGLDRLN 360
Query: 311 IFQTADLFERRNIPQV 358
+FQT DLFER+N+ V
Sbjct: 361 LFQTVDLFERQNVGMV 376
Score = 36.7 bits (81), Expect = 0.022
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Frame = +2
Query: 191 NKLAPGSVKKIQE----RGTNFQLMENIQRFQAAI--KKYGVPEEEIFQTADLFERRNIP 352
N++ PG++ KI R FQ++ENI++F A + + ++F DL+E+ N+
Sbjct: 205 NEVFPGAISKIHGINGGRFHGFQILENIEKFLKACQGEPFNCNVVDLFSPGDLYEKNNVG 264
Query: 353 QV 358
QV
Sbjct: 265 QV 266
>SB_23839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 267
Score = 52.8 bits (121), Expect = 3e-07
Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Frame = +2
Query: 188 ANKLAPGSVKK--IQERGTNFQLMENIQRFQAAIKKYGVPEEEIFQTADLFERRNI 349
AN + PG +KK + F++MENI F IK YGV EE IF T DL+E+RN+
Sbjct: 188 ANAIQPGVIKKPHLNPGKMGFKMMENIGWFVNFIKSYGVQEEYIFVTVDLYEKRNV 243
>SB_18675| Best HMM Match : NUMOD3 (HMM E-Value=8)
Length = 89
Score = 47.6 bits (108), Expect = 1e-05
Identities = 30/77 (38%), Positives = 42/77 (54%)
Frame = +2
Query: 251 MENIQRFQAAIKKYGVPEEEIFQTADLFERRNIPQVTLCLYALGRITQKHPEFTGPQLGP 430
MENI F + GV + ++FQT DL+E++N+ A G PQLGP
Sbjct: 18 MENIGNFLLFCESLGVSKVDLFQTVDLYEKQNMAAAR----AKG--------LNCPQLGP 65
Query: 431 KMADKNERTFTEEQLRA 481
K A+ N R+F E++LRA
Sbjct: 66 KEAEANPRSFDEDKLRA 82
>SB_36121| Best HMM Match : CH (HMM E-Value=0.0017)
Length = 209
Score = 46.4 bits (105), Expect = 3e-05
Identities = 25/78 (32%), Positives = 40/78 (51%)
Frame = +2
Query: 104 WISDVLGAPLPNGAYEXVLRDGVILCKLANKLAPGSVKKIQERGTNFQLMENIQRFQAAI 283
WI P N + L DGV+LC+L +A SV +I ++GT +N+ F A
Sbjct: 36 WIERATFTPFKNDDFRESLADGVLLCELIVNVANISVGRINKQGTAHAGRDNLSVFFRAC 95
Query: 284 KKYGVPEEEIFQTADLFE 337
+ G+ + ++F+ DL E
Sbjct: 96 EALGLDKYQLFEHEDLDE 113
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 38.3 bits (85), Expect(2) = 4e-05
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +2
Query: 230 RGTNFQLMENIQRFQAAIKK--YGVPEEEIFQTADLFERRNIPQVTLCLYALGRITQKH 400
+ T+ + ENI F A ++ + +++FQT LFER+N+ QV + A R +KH
Sbjct: 891 KSTSLGMQENIANFLNACQEEPFNCNPQDLFQTVYLFERQNLGQVISGIQAFARKVRKH 949
Score = 26.6 bits (56), Expect(2) = 4e-05
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 410 TGPQLGPKMADKNERTFTEE 469
T P GPK A+KN R F E+
Sbjct: 984 TVPLFGPKEAEKNPRNFPEQ 1003
>SB_20280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 44.0 bits (99), Expect = 1e-04
Identities = 31/125 (24%), Positives = 63/125 (50%), Gaps = 4/125 (3%)
Frame = +2
Query: 158 LRDGVILCKLANKLAPGSVKKI--QERGTNFQLMENIQRF-QAAIKKYGVPEEEIFQTAD 328
LRDGV+LC++AN L PG+V + + + + F ++NI+ F A + + + + ++F +
Sbjct: 55 LRDGVLLCQVANVLHPGAVVDVGMKPQMSQFMCLKNIRNFLTACTRLFNLADGDLFDANE 114
Query: 329 LFERRNIPQVTLCLYALGRITQKHPEFTGPQLGPKMADKNE-RTFTEEQLRAHNAELNLQ 505
L++ + +V L L + PE P + N+ + +E + ++ E+ L
Sbjct: 115 LYDVSDFGKVVNTLSKLSHL----PESLHRGFEPFPPNTNKFAAYQDEDIYSNLEEIALS 170
Query: 506 MGFNK 520
G +
Sbjct: 171 SGITQ 175
>SB_28994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 422
Score = 41.5 bits (93), Expect = 8e-04
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Frame = +2
Query: 158 LRDGVILCKLANKLAPGSVKKIQ------ERGTNFQLMENIQRFQAAIKKYGVPEEEIFQ 319
L DGV+LC L N G++ I + T + M+N+ F A KK GV E +
Sbjct: 336 LADGVVLCHLVNSAYKGTIPSIHIPSAGVPKLTMTKCMKNVDYFLEACKKLGVDRELLCS 395
Query: 320 TADLFERRNIPQVTLCLYAL 379
+AD+ + ++ +V + AL
Sbjct: 396 SADILQEKSPQRVCATVQAL 415
>SB_2620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 37
Score = 35.5 bits (78), Expect = 0.052
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = +2
Query: 416 PQLGPKMADKNERTFTEEQLRA 481
P LGPK A+ N R FTEEQLRA
Sbjct: 10 PTLGPKEAEANVREFTEEQLRA 31
>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
Length = 819
Score = 34.7 bits (76), Expect = 0.091
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +2
Query: 251 MENIQRFQAAIKKYGVPEEEIFQTADLFERRNIPQV 358
M I +F +GV + ++FQT DL+E++NI QV
Sbjct: 700 MVTIAKFLDFCGTFGVAKSDLFQTVDLYEKQNIQQV 735
>SB_17658| Best HMM Match : GAS2 (HMM E-Value=6.9e-09)
Length = 959
Score = 34.3 bits (75), Expect = 0.12
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 23/125 (18%)
Frame = +2
Query: 80 PSHKSVLTWISDVLGAP-LPNGAYEXVLRDGVILCKLAN-------------------KL 199
P + + +WIS +LG L + +L GV+LC+LAN L
Sbjct: 27 PLKEDLASWISRLLGEEELNTDTFTSMLDTGVVLCRLANFIQTVGEEFFVRNPKFPRRGL 86
Query: 200 APGSVKKIQERGT---NFQLMENIQRFQAAIKKYGVPEEEIFQTADLFERRNIPQVTLCL 370
P ++RG +F +N+ F ++ VP+ +F+T DL +N V L L
Sbjct: 87 FPACGVTYKQRGATHGSFVARDNVSNFIRWCRELRVPDVIMFETEDLVLNKNEKTVLLTL 146
Query: 371 YALGR 385
+ R
Sbjct: 147 LEVAR 151
>SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)
Length = 2086
Score = 30.7 bits (66), Expect = 1.5
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 24/113 (21%)
Frame = +2
Query: 158 LRDGVILCKLANKL--------------APGSVKKIQE--RGTN----FQLMENIQRFQA 277
L DG +LCKLAN + PG K +E RG F EN+Q+F
Sbjct: 697 LEDGTLLCKLANYIQEMADTYGQKHNTHVPGKKIKFKESKRGHRESKLFHSRENVQKFLT 756
Query: 278 AIKKYGVPEEEIFQTADLFE----RRNIPQVTLCLYALGRITQKHPEFTGPQL 424
+ + +PE +F++ D+ R ++ +CL + R K+ P+L
Sbjct: 757 WCRWHDIPEAILFESNDVVLVDECRTGGREIVICLMEIARRVIKYEIKQVPKL 809
>SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)
Length = 820
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +2
Query: 161 RDGVILCKLANKLAPGSV--KKIQERGTNFQLMENIQRFQAAIKKYGVP 301
RDG+ +C+L N L PG + K +E+ TN + I Q A +G+P
Sbjct: 454 RDGMAICELVNALQPGLIPDSKYKEK-TNSEATAKI-GIQTAHDAFGIP 500
>SB_15403| Best HMM Match : CH (HMM E-Value=0)
Length = 1907
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +2
Query: 146 YEXVLRDGVILCKLANKLAPGSV 214
YE V +DG++LCK+ N APG++
Sbjct: 80 YEKV-KDGILLCKMINLSAPGTI 101
>SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12)
Length = 906
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 80 PSHKSVLTWISDVLGAPLPNGAYEXVLRDGVILCKLANKLAPGSVKKIQ 226
P + + W+S VL + + L +GV+LCKLA + + + I+
Sbjct: 36 PLKEDLAEWLSRVLEVEVQADNFMDYLDNGVLLCKLAQLIQKAATEWIK 84
>SB_34659| Best HMM Match : WD40 (HMM E-Value=1.1e-34)
Length = 292
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 152 LRMRHLVAALPKHQRSK*EPTCDLXLVDWQA 60
+ H+V ALP+ Q K + L LVDW A
Sbjct: 1 MNQAHIVVALPEKQAQKLKDDFYLNLVDWSA 31
>SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +3
Query: 237 PTSSSWRTFKGSKRQSRNTEYQKKKYSKPPIFLRGVTFPK*HYVCTLWE 383
P + ++T + R E+Q+K+Y L+G TF + LW+
Sbjct: 51 PNTEKYKTEEALNRSRAYLEFQRKRYGNLYQLLKGNTFTDAEDLVKLWD 99
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,879,983
Number of Sequences: 59808
Number of extensions: 600284
Number of successful extensions: 1299
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1288
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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