Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_C12
(815 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79755-6|CAB02104.1| 192|Caenorhabditis elegans Hypothetical pr... 116 3e-26
AF169201-2|AAF01679.1| 192|Caenorhabditis elegans CPN-1 protein. 116 3e-26
AF040641-1|AAB94947.2| 203|Caenorhabditis elegans Calponin prot... 86 3e-17
U97013-5|AAB52338.1| 142|Caenorhabditis elegans Calponin protei... 83 3e-16
AF039711-7|AAB96713.3| 154|Caenorhabditis elegans Calponin prot... 77 1e-14
Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical pr... 49 3e-06
U39645-2|AAA80365.2| 638|Caenorhabditis elegans Hypothetical pr... 44 2e-04
U23520-5|AAC46554.4| 975|Caenorhabditis elegans Mammalian vav (... 42 7e-04
U23520-4|ABB88236.1| 1007|Caenorhabditis elegans Mammalian vav (... 42 7e-04
DQ136172-1|AAZ66767.1| 1007|Caenorhabditis elegans VAV-1 protein. 42 7e-04
U64856-6|AAB04989.1| 406|Caenorhabditis elegans Hypothetical pr... 36 0.046
U04712-3|AAA81903.1| 357|Caenorhabditis elegans unc-87 protein. 34 0.11
U04712-2|AAA81902.1| 565|Caenorhabditis elegans unc-87 protein. 34 0.11
U04712-1|AAA81901.1| 374|Caenorhabditis elegans unc-87 protein. 34 0.11
U04711-2|AAA81900.1| 357|Caenorhabditis elegans unc-87 protein. 34 0.11
U04711-1|AAA81899.1| 374|Caenorhabditis elegans unc-87 protein. 34 0.11
AF106590-6|AAT68897.1| 544|Caenorhabditis elegans Uncoordinated... 34 0.11
AF106590-5|AAC78234.1| 565|Caenorhabditis elegans Uncoordinated... 34 0.11
AF106590-4|AAK68303.1| 374|Caenorhabditis elegans Uncoordinated... 34 0.11
AF067619-2|AAC17566.2| 202|Caenorhabditis elegans Hypothetical ... 34 0.11
AF067619-3|AAV28340.1| 153|Caenorhabditis elegans Hypothetical ... 33 0.32
AF100673-5|AAC69000.1| 1084|Caenorhabditis elegans Hypothetical ... 31 1.3
Z49907-11|CAF31469.1| 844|Caenorhabditis elegans Hypothetical p... 30 1.7
Z49907-10|CAC42250.1| 875|Caenorhabditis elegans Hypothetical p... 30 1.7
Z49907-9|CAA90092.1| 880|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z48367-8|CAF31471.1| 844|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z48367-7|CAC42266.1| 875|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z48367-6|CAA88325.1| 880|Caenorhabditis elegans Hypothetical pr... 30 1.7
AF319613-1|AAG49523.1| 880|Caenorhabditis elegans CLC-type chlo... 30 1.7
AF173171-1|AAF13164.1| 844|Caenorhabditis elegans CLC chloride ... 30 1.7
Z82264-10|CAB54196.1| 384|Caenorhabditis elegans Hypothetical p... 30 2.3
Z70306-3|CAA94325.1| 318|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z68750-1|CAA92963.1| 284|Caenorhabditis elegans Hypothetical pr... 29 4.0
U64856-5|AAT81185.1| 301|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z79601-5|CAB01882.1| 450|Caenorhabditis elegans Hypothetical pr... 29 5.3
AL110479-29|CAB60311.2| 1044|Caenorhabditis elegans Hypothetical... 29 5.3
Z79757-8|CAB02128.2| 355|Caenorhabditis elegans Hypothetical pr... 28 9.2
U28734-1|AAB52603.2| 397|Caenorhabditis elegans Hypothetical pr... 28 9.2
AF003151-2|AAK18919.3| 277|Caenorhabditis elegans Prion-like-(q... 28 9.2
>Z79755-6|CAB02104.1| 192|Caenorhabditis elegans Hypothetical
protein F43G9.9 protein.
Length = 192
Score = 116 bits (278), Expect = 3e-26
Identities = 68/162 (41%), Positives = 94/162 (58%), Gaps = 4/162 (2%)
Frame = +2
Query: 95 VLTWISDVLGAPLPNGA----YEXVLRDGVILCKLANKLAPGSVKKIQERGTNFQLMENI 262
+L W+ +V G V +DG +LC LAN L PGSVKK+ F+ MENI
Sbjct: 35 ILQWVQNVTGQSFDTQGDADNLVKVFQDGSLLCTLANSLKPGSVKKVNTSAMAFKKMENI 94
Query: 263 QRFQAAIKKYGVPEEEIFQTADLFERRNIPQVTLCLYALGRITQKHPEFTGPQLGPKMAD 442
F ++Y V + E+FQT DL+E ++ V +CL +L R ++K+ F LGPK A
Sbjct: 95 SFFLKFAEEY-VQKSELFQTVDLYEGQDPNAVLICLASLARKSEKN--FGRSGLGPKEAQ 151
Query: 443 KNERTFTEEQLRAHNAELNLQMGFNKGASQSGHGGFGNTRHM 568
+ R +T+EQL+A + + LQMG NKGA+ SG GNTRHM
Sbjct: 152 GDRREWTDEQLKAGHNVIGLQMGSNKGATASGL-NMGNTRHM 192
>AF169201-2|AAF01679.1| 192|Caenorhabditis elegans CPN-1 protein.
Length = 192
Score = 116 bits (278), Expect = 3e-26
Identities = 68/162 (41%), Positives = 94/162 (58%), Gaps = 4/162 (2%)
Frame = +2
Query: 95 VLTWISDVLGAPLPNGA----YEXVLRDGVILCKLANKLAPGSVKKIQERGTNFQLMENI 262
+L W+ +V G V +DG +LC LAN L PGSVKK+ F+ MENI
Sbjct: 35 ILQWVQNVTGQSFDTQGDADNLVKVFQDGSLLCTLANSLKPGSVKKVNTSAMAFKKMENI 94
Query: 263 QRFQAAIKKYGVPEEEIFQTADLFERRNIPQVTLCLYALGRITQKHPEFTGPQLGPKMAD 442
F ++Y V + E+FQT DL+E ++ V +CL +L R ++K+ F LGPK A
Sbjct: 95 SFFLKFAEEY-VQKSELFQTVDLYEGQDPNAVLICLASLARKSEKN--FGRSGLGPKEAQ 151
Query: 443 KNERTFTEEQLRAHNAELNLQMGFNKGASQSGHGGFGNTRHM 568
+ R +T+EQL+A + + LQMG NKGA+ SG GNTRHM
Sbjct: 152 GDRREWTDEQLKAGHNVIGLQMGSNKGATASGL-NMGNTRHM 192
>AF040641-1|AAB94947.2| 203|Caenorhabditis elegans Calponin protein
2 protein.
Length = 203
Score = 85.8 bits (203), Expect = 3e-17
Identities = 53/140 (37%), Positives = 72/140 (51%), Gaps = 2/140 (1%)
Frame = +2
Query: 155 VLRDGVILCKLANKLAPGS-VKKIQERGTNFQLMENIQRFQAAIKKYGVPEEEIFQTADL 331
+L+DGV+LCKL KL P V ++ F +MENI F AA K++GV E FQT DL
Sbjct: 58 LLKDGVMLCKLIEKLDPSCRVVYNKKPKMAFPMMENISNFLAAAKQFGVMEISCFQTVDL 117
Query: 332 FERRNIPQVTLCLYALGRITQ-KHPEFTGPQLGPKMADKNERTFTEEQLRAHNAELNLQM 508
+E + +V CL L + Q + P K+A + R F E +R + LQ
Sbjct: 118 YENKQCYKVIECLRLLAAVAQSRSSHLEHPAWVVKLAQSSPRQFPEAVMRRGEMVIPLQY 177
Query: 509 GFNKGASQSGHGGFGNTRHM 568
G NK ASQ G +G R +
Sbjct: 178 GTNKCASQKGMSPYGLPRQI 197
>U97013-5|AAB52338.1| 142|Caenorhabditis elegans Calponin protein 3
protein.
Length = 142
Score = 82.6 bits (195), Expect = 3e-16
Identities = 42/105 (40%), Positives = 61/105 (58%), Gaps = 4/105 (3%)
Frame = +2
Query: 95 VLTWISDVLGAPLPNGA----YEXVLRDGVILCKLANKLAPGSVKKIQERGTNFQLMENI 262
+L WI + G + + +L+DG +LCK AN + GS+KK+Q+ + F MENI
Sbjct: 30 LLEWIKKLSGENISTSGERDNFHNLLKDGTLLCKAANGIEAGSIKKVQKPISTFACMENI 89
Query: 263 QRFQAAIKKYGVPEEEIFQTADLFERRNIPQVTLCLYALGRITQK 397
F KK GVP EE FQ+ +L E R++ V + L +LGR+ QK
Sbjct: 90 NAFVEFAKKQGVPNEETFQSVELVEGRDLFSVCVTLLSLGRVLQK 134
>AF039711-7|AAB96713.3| 154|Caenorhabditis elegans Calponin protein
4 protein.
Length = 154
Score = 77.4 bits (182), Expect = 1e-14
Identities = 42/105 (40%), Positives = 60/105 (57%), Gaps = 4/105 (3%)
Frame = +2
Query: 95 VLTWISDVLGAPLPNGA----YEXVLRDGVILCKLANKLAPGSVKKIQERGTNFQLMENI 262
+L WI D+ A + L+DG LCKL N + GSVKKI + +NF +ENI
Sbjct: 33 LLEWIRDLTKEDFDCEASRDNFREQLKDGQRLCKLVNAIKAGSVKKIMKPISNFNCLENI 92
Query: 263 QRFQAAIKKYGVPEEEIFQTADLFERRNIPQVTLCLYALGRITQK 397
+F A + GV +EE FQ+ DLF+ R++ VT+ L +L R +K
Sbjct: 93 NQFSTAARSLGVKDEETFQSVDLFDGRDLFSVTVTLQSLARKVEK 137
>Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical
protein F09C3.1 protein.
Length = 1391
Score = 49.2 bits (112), Expect = 3e-06
Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 14/117 (11%)
Frame = +2
Query: 89 KSVLTWISDVLGAP--LPNGAYEXVLRDGVILCKLANKLAPGSV----------KKIQER 232
+ V TW+S+ L +P E LR+GV+L +L N AP V +K ++
Sbjct: 49 EEVRTWLSECLNDDTLVPTTDLEENLRNGVLLARLGNSFAPEVVPEKGIFDIRQEKYRQN 108
Query: 233 GTN--FQLMENIQRFQAAIKKYGVPEEEIFQTADLFERRNIPQVTLCLYALGRITQK 397
++ +NI +++ A++ +PE I +TAD+FE RN+ V CL+AL + +
Sbjct: 109 DATPVYRHSDNIMQWRRAMESVRLPEIFIPETADVFEGRNMKTV-FCLFALATLLHR 164
>U39645-2|AAA80365.2| 638|Caenorhabditis elegans Hypothetical
protein C14F11.2 protein.
Length = 638
Score = 43.6 bits (98), Expect = 2e-04
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Frame = +2
Query: 143 AYEXVLRDGVILCKLANKLAPGSVKKIQERGTNFQLME---NIQRFQAAIKKYGVPEEEI 313
++ L DG LCK NKL P S+ ++ N+ RF +K GVPE +
Sbjct: 543 SFSLQLSDGQELCKFINKLHPESISLASSTDSSIATTRSKMNVDRFLQYCRKIGVPETTL 602
Query: 314 FQTADLFERRNIPQVTLCLYALGRITQ 394
D+ +RN +V + + ++ Q
Sbjct: 603 CSQMDIISKRNPQKVARTVLTVAKLQQ 629
>U23520-5|AAC46554.4| 975|Caenorhabditis elegans Mammalian vav
(oncogene) relatedprotein 1, isoform a protein.
Length = 975
Score = 41.5 bits (93), Expect = 7e-04
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +2
Query: 146 YEXVLRDGVILCKLANKLAPGSV--KKIQ--ERGTNFQLMENIQRFQAAIKKY-GVPEEE 310
+ VLRDG++LC+LAN L P + KKI + + F NI F K Y + + +
Sbjct: 32 FASVLRDGILLCRLANTLVPNGIDQKKIMRTNQPSPFLCCNNINYFAMFCKTYFNLEDAD 91
Query: 311 IFQTADLFERRNIPQV 358
+F DL+ +V
Sbjct: 92 LFTAEDLYYMNGFQKV 107
>U23520-4|ABB88236.1| 1007|Caenorhabditis elegans Mammalian vav
(oncogene) relatedprotein 1, isoform b protein.
Length = 1007
Score = 41.5 bits (93), Expect = 7e-04
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +2
Query: 146 YEXVLRDGVILCKLANKLAPGSV--KKIQ--ERGTNFQLMENIQRFQAAIKKY-GVPEEE 310
+ VLRDG++LC+LAN L P + KKI + + F NI F K Y + + +
Sbjct: 64 FASVLRDGILLCRLANTLVPNGIDQKKIMRTNQPSPFLCCNNINYFAMFCKTYFNLEDAD 123
Query: 311 IFQTADLFERRNIPQV 358
+F DL+ +V
Sbjct: 124 LFTAEDLYYMNGFQKV 139
>DQ136172-1|AAZ66767.1| 1007|Caenorhabditis elegans VAV-1 protein.
Length = 1007
Score = 41.5 bits (93), Expect = 7e-04
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +2
Query: 146 YEXVLRDGVILCKLANKLAPGSV--KKIQ--ERGTNFQLMENIQRFQAAIKKY-GVPEEE 310
+ VLRDG++LC+LAN L P + KKI + + F NI F K Y + + +
Sbjct: 64 FASVLRDGILLCRLANTLVPNGIDQKKIMRTNQPSPFLCCNNINYFAMFCKTYFNLEDAD 123
Query: 311 IFQTADLFERRNIPQV 358
+F DL+ +V
Sbjct: 124 LFTAEDLYYMNGFQKV 139
>U64856-6|AAB04989.1| 406|Caenorhabditis elegans Hypothetical
protein T25F10.6a protein.
Length = 406
Score = 35.5 bits (78), Expect = 0.046
Identities = 19/41 (46%), Positives = 24/41 (58%)
Frame = +2
Query: 461 TEEQLRAHNAELNLQMGFNKGASQSGHGGFGNTRHM*TASK 583
T +Q R ++LQMG NK A+Q+G GFG RH T K
Sbjct: 230 TNDQDRDSQGFIHLQMGTNKFANQAGMTGFGMPRHNITKYK 270
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +2
Query: 464 EEQLRAHNAELNLQMGFNKGASQSGHGGFGNTR 562
EE+ RA + + LQ G NK ASQ+G G G R
Sbjct: 191 EEKARASDGIVPLQSGTNKLASQAGMTGIGMPR 223
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 461 TEEQLRAHNAELNLQMGFNKGASQSGHGGFGNTR 562
T+E+L + +Q G NK ASQ G GFG R
Sbjct: 92 TKEKLMRSEGIIPIQAGSNKYASQKGMTGFGVPR 125
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 431 KMADKNERTFTEEQLRAH-NAELNLQMGFNKGASQSGHGGFGNTR 562
K+ N T+E+ A+ LQ G NK ASQ G GFG R
Sbjct: 130 KVKSDNLAEITDEKKIANLKGSTWLQSGTNKFASQKGQSGFGAVR 174
>U04712-3|AAA81903.1| 357|Caenorhabditis elegans unc-87 protein.
Length = 357
Score = 34.3 bits (75), Expect = 0.11
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +2
Query: 410 TGPQLGPKMADKNERTFTEEQLRAHNAELNLQMGFNKGASQSGHGGFGNTR 562
TG + KM D + E + +E+ LQ G NK ASQ G GFG R
Sbjct: 150 TGRRETTKMVDSKHPEYDHE--KPDQSEIPLQSGTNKFASQKGMTGFGTAR 198
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +2
Query: 431 KMADKNERTFTEEQLRAHNAELNLQMGFNKGASQSGHGGFGNTR 562
KM D N ++ E + QMG N+ ASQ G GFG R
Sbjct: 203 KMVDSNHPDYSHE-CSIDQTTIPSQMGSNQYASQKGMTGFGQPR 245
>U04712-2|AAA81902.1| 565|Caenorhabditis elegans unc-87 protein.
Length = 565
Score = 34.3 bits (75), Expect = 0.11
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +2
Query: 410 TGPQLGPKMADKNERTFTEEQLRAHNAELNLQMGFNKGASQSGHGGFGNTR 562
TG + KM D + E + +E+ LQ G NK ASQ G GFG R
Sbjct: 358 TGRRETTKMVDSKHPEYDHE--KPDQSEIPLQSGTNKFASQKGMTGFGTAR 406
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +2
Query: 431 KMADKNERTFTEEQLRAHNAELNLQMGFNKGASQSGHGGFGNTR 562
KM D N ++ E + QMG N+ ASQ G GFG R
Sbjct: 411 KMVDSNHPDYSHE-CSIDQTTIPSQMGSNQYASQKGMTGFGQPR 453
>U04712-1|AAA81901.1| 374|Caenorhabditis elegans unc-87 protein.
Length = 374
Score = 34.3 bits (75), Expect = 0.11
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +2
Query: 410 TGPQLGPKMADKNERTFTEEQLRAHNAELNLQMGFNKGASQSGHGGFGNTR 562
TG + KM D + E + +E+ LQ G NK ASQ G GFG R
Sbjct: 167 TGRRETTKMVDSKHPEYDHE--KPDQSEIPLQSGTNKFASQKGMTGFGTAR 215
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +2
Query: 431 KMADKNERTFTEEQLRAHNAELNLQMGFNKGASQSGHGGFGNTR 562
KM D N ++ E + QMG N+ ASQ G GFG R
Sbjct: 220 KMVDSNHPDYSHE-CSIDQTTIPSQMGSNQYASQKGMTGFGQPR 262
>U04711-2|AAA81900.1| 357|Caenorhabditis elegans unc-87 protein.
Length = 357
Score = 34.3 bits (75), Expect = 0.11
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +2
Query: 410 TGPQLGPKMADKNERTFTEEQLRAHNAELNLQMGFNKGASQSGHGGFGNTR 562
TG + KM D + E + +E+ LQ G NK ASQ G GFG R
Sbjct: 150 TGRRETTKMVDSKHPEYDHE--KPDQSEIPLQSGTNKFASQKGMTGFGTAR 198
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +2
Query: 431 KMADKNERTFTEEQLRAHNAELNLQMGFNKGASQSGHGGFGNTR 562
KM D N ++ E + QMG N+ ASQ G GFG R
Sbjct: 203 KMVDSNHPDYSHE-CSIDQTTIPSQMGSNQYASQKGMTGFGQPR 245
>U04711-1|AAA81899.1| 374|Caenorhabditis elegans unc-87 protein.
Length = 374
Score = 34.3 bits (75), Expect = 0.11
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +2
Query: 410 TGPQLGPKMADKNERTFTEEQLRAHNAELNLQMGFNKGASQSGHGGFGNTR 562
TG + KM D + E + +E+ LQ G NK ASQ G GFG R
Sbjct: 167 TGRRETTKMVDSKHPEYDHE--KPDQSEIPLQSGTNKFASQKGMTGFGTAR 215
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +2
Query: 431 KMADKNERTFTEEQLRAHNAELNLQMGFNKGASQSGHGGFGNTR 562
KM D N ++ E + QMG N+ ASQ G GFG R
Sbjct: 220 KMVDSNHPDYSHE-CSIDQTTIPSQMGSNQYASQKGMTGFGQPR 262
>AF106590-6|AAT68897.1| 544|Caenorhabditis elegans Uncoordinated
protein 87, isoform c protein.
Length = 544
Score = 34.3 bits (75), Expect = 0.11
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +2
Query: 410 TGPQLGPKMADKNERTFTEEQLRAHNAELNLQMGFNKGASQSGHGGFGNTR 562
TG + KM D + E + +E+ LQ G NK ASQ G GFG R
Sbjct: 337 TGRRETTKMVDSKHPEYDHE--KPDQSEIPLQSGTNKFASQKGMTGFGTAR 385
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +2
Query: 431 KMADKNERTFTEEQLRAHNAELNLQMGFNKGASQSGHGGFGNTR 562
KM D N ++ E + QMG N+ ASQ G GFG R
Sbjct: 390 KMVDSNHPDYSHE-CSIDQTTIPSQMGSNQYASQKGMTGFGQPR 432
>AF106590-5|AAC78234.1| 565|Caenorhabditis elegans Uncoordinated
protein 87, isoform a protein.
Length = 565
Score = 34.3 bits (75), Expect = 0.11
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +2
Query: 410 TGPQLGPKMADKNERTFTEEQLRAHNAELNLQMGFNKGASQSGHGGFGNTR 562
TG + KM D + E + +E+ LQ G NK ASQ G GFG R
Sbjct: 358 TGRRETTKMVDSKHPEYDHE--KPDQSEIPLQSGTNKFASQKGMTGFGTAR 406
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +2
Query: 431 KMADKNERTFTEEQLRAHNAELNLQMGFNKGASQSGHGGFGNTR 562
KM D N ++ E + QMG N+ ASQ G GFG R
Sbjct: 411 KMVDSNHPDYSHE-CSIDQTTIPSQMGSNQYASQKGMTGFGQPR 453
>AF106590-4|AAK68303.1| 374|Caenorhabditis elegans Uncoordinated
protein 87, isoform b protein.
Length = 374
Score = 34.3 bits (75), Expect = 0.11
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +2
Query: 410 TGPQLGPKMADKNERTFTEEQLRAHNAELNLQMGFNKGASQSGHGGFGNTR 562
TG + KM D + E + +E+ LQ G NK ASQ G GFG R
Sbjct: 167 TGRRETTKMVDSKHPEYDHE--KPDQSEIPLQSGTNKFASQKGMTGFGTAR 215
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +2
Query: 431 KMADKNERTFTEEQLRAHNAELNLQMGFNKGASQSGHGGFGNTR 562
KM D N ++ E + QMG N+ ASQ G GFG R
Sbjct: 220 KMVDSNHPDYSHE-CSIDQTTIPSQMGSNQYASQKGMTGFGQPR 262
>AF067619-2|AAC17566.2| 202|Caenorhabditis elegans Hypothetical
protein K03E5.2a protein.
Length = 202
Score = 34.3 bits (75), Expect = 0.11
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +2
Query: 437 ADKNERTFTEEQLRAHNAELNLQMGFNKGASQSGHGGFGNTRHM*TASKF 586
AD +++ EEQ + +A + LQ G N+ SQ G GFG R+ T +F
Sbjct: 79 ADHDKQWLIEEQKQYSDAIVRLQSGTNQFESQKGKTGFGMPRNTQTKVEF 128
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = +2
Query: 458 FTEEQLRAHNAELNLQMGFNKGASQSGHGGFGNTRHM*TASKF 586
+T QLR +A + LQ G N+ SQ G GFG R+ T F
Sbjct: 36 WTLRQLRQTDAMVPLQSGTNQFDSQRGKTGFGMPRNTQTKVDF 78
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 479 AHNAELNLQMGFNKGASQSGHGGFGNTR 562
AH++ + LQ G N+ SQ G GFG R
Sbjct: 142 AHDSIVRLQSGTNQYESQKGMTGFGTPR 169
>AF067619-3|AAV28340.1| 153|Caenorhabditis elegans Hypothetical
protein K03E5.2b protein.
Length = 153
Score = 32.7 bits (71), Expect = 0.32
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +2
Query: 437 ADKNERTFTEEQLRAHNAELNLQMGFNKGASQSGHGGFGNTR 562
AD +++ EEQ + +A + LQ G N+ SQ G GFG R
Sbjct: 79 ADHDKQWLIEEQKQYSDAIVRLQSGTNQFESQKGMTGFGTPR 120
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = +2
Query: 458 FTEEQLRAHNAELNLQMGFNKGASQSGHGGFGNTRHM*TASKF 586
+T QLR +A + LQ G N+ SQ G GFG R+ T F
Sbjct: 36 WTLRQLRQTDAMVPLQSGTNQFDSQRGKTGFGMPRNTQTKVDF 78
>AF100673-5|AAC69000.1| 1084|Caenorhabditis elegans Hypothetical
protein Y66H1B.3 protein.
Length = 1084
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +2
Query: 71 QQGPSHKSVLTWISDVL-GAPLPNGAYEXVLRDGVILCKLANKLAPGSVKKIQERGTNFQ 247
++ P K +L WI + L G P+ N + DGV L L N +APG+++ + N
Sbjct: 149 EETPKQK-LLNWIRNRLPGMPISNFTSDW--NDGVALGALVNSMAPGALEDWENWSPN-D 204
Query: 248 LMENIQR 268
+EN ++
Sbjct: 205 ALENTEK 211
>Z49907-11|CAF31469.1| 844|Caenorhabditis elegans Hypothetical
protein B0491.8c protein.
Length = 844
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 62 PASQQGPSHKSVLTWISDVLGAPLPNGAYEXVLRDGVILCKLANKLAP 205
P +GP + + V+GA GA L VI+C+L +L+P
Sbjct: 449 PEGMRGPGGPPIHPGLYAVVGAAAYTGAVTHTLSVSVIICELTGQLSP 496
>Z49907-10|CAC42250.1| 875|Caenorhabditis elegans Hypothetical
protein B0491.8b protein.
Length = 875
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 62 PASQQGPSHKSVLTWISDVLGAPLPNGAYEXVLRDGVILCKLANKLAP 205
P +GP + + V+GA GA L VI+C+L +L+P
Sbjct: 480 PEGMRGPGGPPIHPGLYAVVGAAAYTGAVTHTLSVSVIICELTGQLSP 527
>Z49907-9|CAA90092.1| 880|Caenorhabditis elegans Hypothetical
protein B0491.8a protein.
Length = 880
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 62 PASQQGPSHKSVLTWISDVLGAPLPNGAYEXVLRDGVILCKLANKLAP 205
P +GP + + V+GA GA L VI+C+L +L+P
Sbjct: 485 PEGMRGPGGPPIHPGLYAVVGAAAYTGAVTHTLSVSVIICELTGQLSP 532
>Z48367-8|CAF31471.1| 844|Caenorhabditis elegans Hypothetical
protein B0491.8c protein.
Length = 844
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 62 PASQQGPSHKSVLTWISDVLGAPLPNGAYEXVLRDGVILCKLANKLAP 205
P +GP + + V+GA GA L VI+C+L +L+P
Sbjct: 449 PEGMRGPGGPPIHPGLYAVVGAAAYTGAVTHTLSVSVIICELTGQLSP 496
>Z48367-7|CAC42266.1| 875|Caenorhabditis elegans Hypothetical
protein B0491.8b protein.
Length = 875
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 62 PASQQGPSHKSVLTWISDVLGAPLPNGAYEXVLRDGVILCKLANKLAP 205
P +GP + + V+GA GA L VI+C+L +L+P
Sbjct: 480 PEGMRGPGGPPIHPGLYAVVGAAAYTGAVTHTLSVSVIICELTGQLSP 527
>Z48367-6|CAA88325.1| 880|Caenorhabditis elegans Hypothetical
protein B0491.8a protein.
Length = 880
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 62 PASQQGPSHKSVLTWISDVLGAPLPNGAYEXVLRDGVILCKLANKLAP 205
P +GP + + V+GA GA L VI+C+L +L+P
Sbjct: 485 PEGMRGPGGPPIHPGLYAVVGAAAYTGAVTHTLSVSVIICELTGQLSP 532
>AF319613-1|AAG49523.1| 880|Caenorhabditis elegans CLC-type
chloride channel CLH-2b protein.
Length = 880
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 62 PASQQGPSHKSVLTWISDVLGAPLPNGAYEXVLRDGVILCKLANKLAP 205
P +GP + + V+GA GA L VI+C+L +L+P
Sbjct: 485 PEGMRGPGGPPIHPGLYAVVGAAAYTGAVTHTLSVSVIICELTGQLSP 532
>AF173171-1|AAF13164.1| 844|Caenorhabditis elegans CLC chloride
channel protein protein.
Length = 844
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 62 PASQQGPSHKSVLTWISDVLGAPLPNGAYEXVLRDGVILCKLANKLAP 205
P +GP + + V+GA GA L VI+C+L +L+P
Sbjct: 449 PEGMRGPGGPPIHPGLYAVVGAAAYTGAVTHTLSVSVIICELTGQLSP 496
>Z82264-10|CAB54196.1| 384|Caenorhabditis elegans Hypothetical
protein C49C3.10 protein.
Length = 384
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = +2
Query: 170 VILCKLANKLAPGSVKKIQERGTNFQLMENIQRFQAAIKKYGVPEEEIFQTADLFE 337
+++ + P ++ E NF L N+ ++QA I Y + +FQ FE
Sbjct: 235 ILMVQFLGNAGPSFYSQMNEHARNFLLRYNLDQYQAPINFYSRFPDTVFQGVLQFE 290
>Z70306-3|CAA94325.1| 318|Caenorhabditis elegans Hypothetical
protein C06G8.4 protein.
Length = 318
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 617 FVHGRIWLNDFFTFKIILPITL 682
F+ GRIW+N F F I +P +
Sbjct: 253 FILGRIWINPIFEFSIFVPTVI 274
>Z68750-1|CAA92963.1| 284|Caenorhabditis elegans Hypothetical
protein K01A6.4 protein.
Length = 284
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +2
Query: 419 QLGPKMADKNERTFTEEQLRAHNAELNLQMGFNKGASQSGHGGFG 553
Q G + + ++ +++ Q GF G+SQ G GGFG
Sbjct: 35 QSGQRQTGQGQQVGSQQGFGGMQGGFGGQSGFGGGSSQGGFGGFG 79
>U64856-5|AAT81185.1| 301|Caenorhabditis elegans Hypothetical
protein T25F10.6b protein.
Length = 301
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 461 TEEQLRAHNAELNLQMGFNKGASQSGHGGFGNTR 562
T+E+L + +Q G NK ASQ G GFG R
Sbjct: 92 TKEKLMRSEGIIPIQAGSNKYASQKGMTGFGVPR 125
>Z79601-5|CAB01882.1| 450|Caenorhabditis elegans Hypothetical
protein K09A9.3 protein.
Length = 450
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 593 IFSTLISVFVHGRIWLNDFFTFKIILPITL 682
+ +T+I ++V WL FFT II I L
Sbjct: 133 VITTMIFIYVETSTWLTGFFTLTIITIIVL 162
>AL110479-29|CAB60311.2| 1044|Caenorhabditis elegans Hypothetical
protein Y105C5B.2 protein.
Length = 1044
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = -3
Query: 252 MSWKLVPLSCIFFTDPGANLLANLQRITPSLSTXSYAPFGSG 127
M W+ VPL I F D G +L A+ + T S + SY+ SG
Sbjct: 440 MPWR-VPLDSISFDDNGGSLSASRRVSTISTARASYSSIFSG 480
>Z79757-8|CAB02128.2| 355|Caenorhabditis elegans Hypothetical
protein F55B12.7 protein.
Length = 355
Score = 27.9 bits (59), Expect = 9.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 662 IILPITLCQRSCDRFYLIYFKY 727
++ PI SC+RFY++YF +
Sbjct: 127 LLTPILQVSMSCNRFYVLYFPF 148
>U28734-1|AAB52603.2| 397|Caenorhabditis elegans Hypothetical
protein C53C9.2 protein.
Length = 397
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 464 EEQLRAHNAEL-NLQMGFNKGASQSGHGGFGNTRH 565
EE+L+ + + LQ G NK ASQ G GFG R+
Sbjct: 244 EEELKQKSEGIVPLQSGTNKLASQRGMTGFGTPRN 278
>AF003151-2|AAK18919.3| 277|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 24
protein.
Length = 277
Score = 27.9 bits (59), Expect = 9.2
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Frame = +2
Query: 182 KLANKLAPGSVKK-IQERGTNFQLMENIQRFQAAIKKYGVPEEEIFQTADLFERRNIPQV 358
K NK KK I +RG QL ++ ++ K VP+E + + E IP V
Sbjct: 193 KWTNKQVEDMFKKSIDDRGDEIQLEDDFKKIDKNYKTQSVPQESLRTLSARKEVEKIPFV 252
Query: 359 TLCLYALGRITQKHP 403
+G T P
Sbjct: 253 AGKSSGVGAKTTASP 267
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,215,441
Number of Sequences: 27780
Number of extensions: 467068
Number of successful extensions: 1246
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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