Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_C09
(852 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 32 0.090
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 32 0.12
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 31 0.16
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy... 31 0.27
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 30 0.48
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 29 0.63
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom... 29 0.63
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch... 29 0.63
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 27 4.5
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c... 27 4.5
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac... 26 7.8
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 32.3 bits (70), Expect = 0.090
Identities = 24/91 (26%), Positives = 39/91 (42%)
Frame = +3
Query: 495 SEESWIASVVGFALIVGNFIITLILDNIGRKKSHILTIFPNLAGWFLFLLVNNFPGLMAA 674
S+ SW A+ + + D GRKK+ + G FL + L+AA
Sbjct: 124 SQVSWTATAYMISCTAFQPLFGKFCDIYGRKKTLLAAYCVFGIGCFLCGTSRSLWQLVAA 183
Query: 675 RFLQGIAMGMLGPLGSIIIGEMTDPKSRGVF 767
R + GI G + SI++ ++ K RG +
Sbjct: 184 RAIAGIGGGGMNSTVSILMSDIVPLKQRGTY 214
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 31.9 bits (69), Expect = 0.12
Identities = 25/91 (27%), Positives = 42/91 (46%)
Frame = +3
Query: 495 SEESWIASVVGFALIVGNFIITLILDNIGRKKSHILTIFPNLAGWFLFLLVNNFPGLMAA 674
S SWI S A + + + +GRK + IF + G L N L+
Sbjct: 131 SSSSWIGSAYVLASNAVLPAVGVFCNILGRKIVLYICIFFFMLGSALCGASQNMIWLIVC 190
Query: 675 RFLQGIAMGMLGPLGSIIIGEMTDPKSRGVF 767
R +QG+ G + L +III ++T ++R ++
Sbjct: 191 RAIQGLGGGGIISLVNIIISDITPLRTRPMY 221
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 31.5 bits (68), Expect = 0.16
Identities = 19/92 (20%), Positives = 39/92 (42%)
Frame = +3
Query: 486 LTRSEESWIASVVGFALIVGNFIITLILDNIGRKKSHILTIFPNLAGWFLFLLVNNFPGL 665
LT + +I S ++G I + D GRK + + G + + ++ +
Sbjct: 124 LTNGGKEFITSATSLGALLGGIIAGALADFFGRKPVIAIASIIIIVGSIVQVTAHHLWHM 183
Query: 666 MAARFLQGIAMGMLGPLGSIIIGEMTDPKSRG 761
+ RF+ G +G+ + + + E+ K RG
Sbjct: 184 IVGRFVIGWGVGIASLIIPLYLSEIAPSKIRG 215
>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 557
Score = 30.7 bits (66), Expect = 0.27
Identities = 19/92 (20%), Positives = 39/92 (42%)
Frame = +3
Query: 486 LTRSEESWIASVVGFALIVGNFIITLILDNIGRKKSHILTIFPNLAGWFLFLLVNNFPGL 665
L+ ++ I S FA ++ + D +GRK+ + + G + N +
Sbjct: 117 LSSGQKELITSATSFAALISATTSGWLADWVGRKRLLLCADAIFVIGSVIMAASRNVAMM 176
Query: 666 MAARFLQGIAMGMLGPLGSIIIGEMTDPKSRG 761
+ RF+ G +G+ + + I E+ + RG
Sbjct: 177 VVGRFIVGYGIGLTSLIVPMYITELAPARLRG 208
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 29.9 bits (64), Expect = 0.48
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -3
Query: 631 NQPARFGKMVRM*DFFLPMLSRINVIMKFPTMRAKPTTDAIHDSSDL--VRWMWES 470
NQ F K V+ LP +SR+N +FP+ +P + AI+ SDL + +WE+
Sbjct: 84 NQQNIFAKPVKPASSELPQVSRLNGASQFPS--REPASTAINKLSDLQPMASIWEN 137
>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 29.5 bits (63), Expect = 0.63
Identities = 24/112 (21%), Positives = 50/112 (44%), Gaps = 3/112 (2%)
Frame = +3
Query: 441 AILIPSLRKSDSHIHLTRSEESWIASVVGFALIVGNFIITLILDNIGRKKSHIL--TIFP 614
++ PS+ H +R+ + A++ ++ GN I + + GR+ +++ ++F
Sbjct: 60 SVFAPSISNIAEQFHASRTLVTLGATLYTLGILFGNLIFAPLSEQFGRRPIYLIGYSVFA 119
Query: 615 NLAGWFLFLLVNNFPGLMAARFLQGIAMGMLG-PLGSIIIGEMTDPKSRGVF 767
L L N + RF G+ G +G GS + ++ + K RG +
Sbjct: 120 LLQ--IPIALSVNLAMFLVFRFFSGL-FGSVGLSNGSGSLADLFEKKDRGKY 168
>SPBPB2B2.16c |||MFS family membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 29.5 bits (63), Expect = 0.63
Identities = 24/112 (21%), Positives = 50/112 (44%), Gaps = 3/112 (2%)
Frame = +3
Query: 441 AILIPSLRKSDSHIHLTRSEESWIASVVGFALIVGNFIITLILDNIGRKKSHIL--TIFP 614
++ PS+ H +R+ + A++ ++ GN I + + GR+ +++ ++F
Sbjct: 60 SVFAPSISNIAEQFHASRTLVTLGATLYTLGILFGNLIFAPLSEQFGRRPIYLIGYSVFA 119
Query: 615 NLAGWFLFLLVNNFPGLMAARFLQGIAMGMLG-PLGSIIIGEMTDPKSRGVF 767
L L N + RF G+ G +G GS + ++ + K RG +
Sbjct: 120 LLQ--IPIALSVNLAMFLVFRFFSGL-FGSVGLSNGSGSLADLFEKKDRGKY 168
>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 29.5 bits (63), Expect = 0.63
Identities = 24/112 (21%), Positives = 50/112 (44%), Gaps = 3/112 (2%)
Frame = +3
Query: 441 AILIPSLRKSDSHIHLTRSEESWIASVVGFALIVGNFIITLILDNIGRKKSHIL--TIFP 614
++ PS+ H +R+ + A++ ++ GN I + + GR+ +++ ++F
Sbjct: 60 SVFAPSISNIAEQFHASRTLVTLGATLYTLGILFGNLIFAPLSEQFGRRPIYLIGYSVFA 119
Query: 615 NLAGWFLFLLVNNFPGLMAARFLQGIAMGMLG-PLGSIIIGEMTDPKSRGVF 767
L L N + RF G+ G +G GS + ++ + K RG +
Sbjct: 120 LLQ--IPIALSVNLAMFLVFRFFSGL-FGSVGLSNGSGSLADLFEKKDRGKY 168
>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 26.6 bits (56), Expect = 4.5
Identities = 23/88 (26%), Positives = 39/88 (44%)
Frame = +3
Query: 495 SEESWIASVVGFALIVGNFIITLILDNIGRKKSHILTIFPNLAGWFLFLLVNNFPGLMAA 674
S SWI + A ++ + +GRK +I L G + N L+
Sbjct: 125 SSYSWIGTAYSLAETSILPFCGIMSEVVGRKIVLYTSIVLFLFGSAMCGAAQNMLWLVLC 184
Query: 675 RFLQGIAMGMLGPLGSIIIGEMTDPKSR 758
R +QGI G + L +I+I ++T ++R
Sbjct: 185 RAVQGIGGGGIMSLVTIVIADITPLQTR 212
>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 26.6 bits (56), Expect = 4.5
Identities = 23/88 (26%), Positives = 39/88 (44%)
Frame = +3
Query: 495 SEESWIASVVGFALIVGNFIITLILDNIGRKKSHILTIFPNLAGWFLFLLVNNFPGLMAA 674
S SWI + A ++ + +GRK +I L G + N L+
Sbjct: 125 SSYSWIGTAYTLAQTSILPFCGIMSEVVGRKIVLYTSIVLFLFGSAMCGAAQNMLWLVLC 184
Query: 675 RFLQGIAMGMLGPLGSIIIGEMTDPKSR 758
R +QGI G + L +I+I ++T ++R
Sbjct: 185 RAVQGIGGGGITSLVTIVIADITPLQTR 212
>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 797
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 553 MKFPTMRAKPT-TDAIHDSSDLVRWMWESDFRRLGIN 446
+ FP + PT T I + ++ WM ++ R GIN
Sbjct: 253 LPFPILFLSPTSTKTIDYAKSMIEWMGDNIVRDFGIN 289
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,483,481
Number of Sequences: 5004
Number of extensions: 74925
Number of successful extensions: 234
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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