Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_C09
(852 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2499| Best HMM Match : Sugar_tr (HMM E-Value=1e-28) 66 3e-11
SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0) 65 8e-11
SB_11879| Best HMM Match : WD40 (HMM E-Value=5.8e-21) 37 0.024
SB_9691| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-08) 36 0.032
SB_33819| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.042
SB_27413| Best HMM Match : 7tm_1 (HMM E-Value=6.5e-08) 36 0.042
SB_51246| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.055
SB_41877| Best HMM Match : Agenet (HMM E-Value=1.9) 30 2.7
SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7
SB_47404| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3
SB_19049| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3
SB_34545| Best HMM Match : RCC1 (HMM E-Value=0.027) 28 8.4
SB_34431| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_2499| Best HMM Match : Sugar_tr (HMM E-Value=1e-28)
Length = 456
Score = 66.1 bits (154), Expect = 3e-11
Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 1/156 (0%)
Frame = +3
Query: 387 TASVAINIVGHGCVIGFPAILIPSLR-KSDSHIHLTRSEESWIASVVGFALIVGNFIITL 563
T A+ + G +G+ + L K+ + ++L E +W S++ ++G I
Sbjct: 44 TFIAALGPLSFGYCMGYSSAATTQLENKNATDLYLNADEITWFGSLLNIGAMLGGPIQGF 103
Query: 564 ILDNIGRKKSHILTIFPNLAGWFLFLLVNNFPGLMAARFLQGIAMGMLGPLGSIIIGEMT 743
++D IGRK + ILT P +GW L N L A RF+ G+ +GM + I E
Sbjct: 104 LIDLIGRKFALILTSVPFCSGWLLIGFGKNAAMLNAGRFMSGLGVGMASLNVPVYISETA 163
Query: 744 DPKSRGVFXXXXXXXXXXXXXXXHALGTCFTWQIXA 851
+RG +A+G F W+ A
Sbjct: 164 SFSNRGAMGSINQLGITAGILISYAIGYAFDWRWSA 199
>SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)
Length = 512
Score = 64.9 bits (151), Expect = 8e-11
Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 1/158 (0%)
Frame = +3
Query: 372 RQCFVTASVAINIVGHGCVIGFPAILIPSL-RKSDSHIHLTRSEESWIASVVGFALIVGN 548
R T A+ + G +G+ + + L +S + LT S+ SW +S+V I+G
Sbjct: 43 RMVLATFIAALGPLSFGFCLGYSSSALEDLIAESKESVKLTVSQGSWFSSLVTLGAILGA 102
Query: 549 FIITLILDNIGRKKSHILTIFPNLAGWFLFLLVNNFPGLMAARFLQGIAMGMLGPLGSII 728
+ L+ GRK + + P GW L N+ L RF+ G+A+GM+ +
Sbjct: 103 PLGGWTLEYFGRKGTIMACAVPFEVGWMLIAYANSHYMLYIGRFITGLAVGMVSLTVPVY 162
Query: 729 IGEMTDPKSRGVFXXXXXXXXXXXXXXXHALGTCFTWQ 842
I E++ P RG+ +++G W+
Sbjct: 163 IAEISSPSLRGMLGSVNQLAVTMGLLLAYSMGVVLKWR 200
>SB_11879| Best HMM Match : WD40 (HMM E-Value=5.8e-21)
Length = 447
Score = 36.7 bits (81), Expect = 0.024
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +2
Query: 449 DSESPEIRFPHPSYQI*GVMDSICRRFRPHRGKLHNYINSGQHRQEEVSHPHHFPKPRRL 628
D + FP+P+ +I + D R PHR + SG Q VSH PKP++
Sbjct: 281 DDLDGRLNFPNPTLRIHALPDVRSYRVTPHRVTPQAMVTSGPLYQ-LVSHSSTLPKPKQH 339
Query: 629 VPVSTSQQLSWSHGGQ-VPPRNRDGHAWTFGLNN 727
+ S SWSH + +RD +GL+N
Sbjct: 340 SRIIWS--CSWSHDDKYFITASRDKKVIMWGLDN 371
>SB_9691| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-08)
Length = 419
Score = 36.3 bits (80), Expect = 0.032
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Frame = +3
Query: 387 TASVAINIVGHG-CVIGFPAILIPSLRKSDSHIHLTRSEESWIASVVGFALIVGNFI--I 557
TA + + +V G ++G +LI S R+S S+ H+TR + S VGF I G I
Sbjct: 144 TAQLLVGVVAVGDLLMGVYLLLITSTRRSVSYEHMTRLQRSHFCYFVGFVSIFGQGISAF 203
Query: 558 TLILDNIGRKKSHILTIFPNLA 623
+ + I R + + + P++A
Sbjct: 204 SSFIVTIERYLAVVFCLQPDIA 225
>SB_33819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 35.9 bits (79), Expect = 0.042
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 387 TASVAINIVGHG-CVIGFPAILIPSLRKSDSHIHLTRSEESWIASVVGFALIVGNFI 554
TA + + +V G ++G +LI S R+S S+ H+TR + S VGF I G I
Sbjct: 342 TAQLLVGVVAVGDLLMGVYLLLITSTRRSVSYEHMTRLQRSHFCYFVGFVSIFGQGI 398
>SB_27413| Best HMM Match : 7tm_1 (HMM E-Value=6.5e-08)
Length = 646
Score = 35.9 bits (79), Expect = 0.042
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 387 TASVAINIVGHG-CVIGFPAILIPSLRKSDSHIHLTRSEESWIASVVGFALIVGNFI 554
TA + + +V G ++G +LI S R+S S+ H+TR + S VGF I G I
Sbjct: 263 TAQLLVGVVAVGDLLMGVYLLLITSTRRSVSYEHMTRLQRSHFCYFVGFVSIFGQGI 319
Score = 35.9 bits (79), Expect = 0.042
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 387 TASVAINIVGHG-CVIGFPAILIPSLRKSDSHIHLTRSEESWIASVVGFALIVGNFI 554
TA + + +V G ++G +LI S R+S S+ H+TR + S VGF I G I
Sbjct: 385 TAQLLVGVVAVGDLLMGVYLLLITSTRRSVSYEHMTRLQRSHFCYFVGFVSIFGQGI 441
>SB_51246| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 431
Score = 35.5 bits (78), Expect = 0.055
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 387 TASVAINIVGHG-CVIGFPAILIPSLRKSDSHIHLTRSEESWIASVVGFALIVGNFI 554
TA + + +V G ++G + I S R+S S+ H+TR + S VGF I G I
Sbjct: 225 TAQLLVGVVAVGDLLMGIYLLFITSTRRSVSYEHMTRLQRSHFCYFVGFVFIFGQGI 281
>SB_41877| Best HMM Match : Agenet (HMM E-Value=1.9)
Length = 237
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/51 (35%), Positives = 20/51 (39%)
Frame = +2
Query: 557 YINSGQHRQEEVSHPHHFPKPRRLVPVSTSQQLSWSHGGQVPPRNRDGHAW 709
Y N+ QH + HH P R VS S S HGG R R W
Sbjct: 182 YENNFQHLTPDSHQYHHAPVERNFSQVSGSSCDSGYHGGAGNSRKRKTGLW 232
>SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1499
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/51 (35%), Positives = 20/51 (39%)
Frame = +2
Query: 557 YINSGQHRQEEVSHPHHFPKPRRLVPVSTSQQLSWSHGGQVPPRNRDGHAW 709
Y N+ QH + HH P R VS S S HGG R R W
Sbjct: 518 YENNFQHLTPDSHQYHHAPVERNFSQVSGSSCDSGYHGGAGNSRKRKTGLW 568
>SB_47404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 503 VMDSICRRFRPHRGKLHNYINSGQHRQEEVS 595
V ICR P LHNYIN G+ R+ +S
Sbjct: 126 VYHRICRNI-PRSSNLHNYINFGRLRRRPMS 155
>SB_19049| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1051
Score = 28.7 bits (61), Expect = 6.3
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = -3
Query: 427 TQPWPTMLMATLAVTKHCLSKGVYLPSFI--STVSPIFFKVNNNCLSIQLQYIFTTNTY* 254
T+P P M A + K V +F S VSP F + + ++ +F TNT+
Sbjct: 831 TKPTPASHMTYTADLTQTVQKAVIAKAFKMWSDVSPFIFTLTTDKTKAHIKILFGTNTH- 889
Query: 253 VHNTIRPFGRP 221
N ++ F P
Sbjct: 890 -GNCLKAFDGP 899
>SB_34545| Best HMM Match : RCC1 (HMM E-Value=0.027)
Length = 230
Score = 28.3 bits (60), Expect = 8.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 543 GNFIITLILDNIGRKKSHILTIFPNLAGWFLF 638
GN + TLI+ NI +K+H L + P+ + F
Sbjct: 13 GNLVTTLIIMNIHLEKAHTLALVPSSGRVYTF 44
>SB_34431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 108
Score = 28.3 bits (60), Expect = 8.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 496 DLVRWMWESDFRRLGINIAGKPMTQPWPTMLM 401
D+ +W S FR+ G+ I +T+ W T LM
Sbjct: 46 DIAVRIWVSQFRQDGMKILNSLITRDWTTSLM 77
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,864,891
Number of Sequences: 59808
Number of extensions: 575872
Number of successful extensions: 1389
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1387
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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