Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_C08
         (862 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0371 + 28364896-28366182,28366510-28366623,28366861-283671...    35   0.096
04_01_0314 - 4243928-4244361,4245178-4245415                           29   3.6  
01_05_0397 + 21753095-21753814                                         29   3.6  
11_06_0271 - 21804629-21805836,21805997-21806015                       29   4.8  
06_01_0333 + 2404459-2404857,2404917-2405009,2405428-2405522,240...    29   6.3  
08_02_1417 - 26922775-26922986,26923102-26923291,26923816-269239...    28   8.3  

>02_05_0371 +
           28364896-28366182,28366510-28366623,28366861-28367125,
           28367981-28368105
          Length = 596

 Score = 34.7 bits (76), Expect = 0.096
 Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
 Frame = -3

Query: 437 LRAVSDRGVGGELDNSAGVLGIVGV-DIQASTDNSSALHDDLVTVSRSSRNAVQNFHRQN 261
           +R + D GVG E++   G   I+G+  +Q STD+S+++ +++  + R   +  Q      
Sbjct: 390 MRRMEDVGVGLEIETRPGGCAIIGLKPLQLSTDHSTSIEEEVHRIKREHPDDDQCIVNDR 449

Query: 260 VAQVERVEVNRILGVAF 210
           V    R++V R  G  +
Sbjct: 450 VK--GRLKVTRAFGAGY 464


>04_01_0314 - 4243928-4244361,4245178-4245415
          Length = 223

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
 Frame = +1

Query: 88  HSPSLFY*RYSKQVIASSATNVTVNRIRTAGTRSRAPNPH*NATPRIRLTSTRS---TCA 258
           H PSLF   ++   +A       +    T  TR     PH +A+PRI  TS ++      
Sbjct: 11  HPPSLFS-LFTACTVAKPTAKSALEATATMYTRDSPAPPHSSASPRIEETSWKAEQQASG 69

Query: 259 TFCL 270
            FCL
Sbjct: 70  RFCL 73


>01_05_0397 + 21753095-21753814
          Length = 239

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 354 LDVNPNDSQHTCRVVELASNTAIADSAKVKSCAVCNK 464
           +D N + ++H    +++  +TA +DS  V SC VC +
Sbjct: 8   VDTNWSAAEHDHIAIDIGDSTAGSDSDDVPSCVVCTE 44


>11_06_0271 - 21804629-21805836,21805997-21806015
          Length = 408

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +3

Query: 375 SQHTCRVVELASNTAIADSAKVKSCAVCNKDNCNGAGSISFSLPLATFALIATYF 539
           S   C V  ++S T       ++S  VC     +G+  I+F       A+++TYF
Sbjct: 183 SDSMCIVAAISSRTLALWHPGMRSWCVCRSFGIDGSADIAFYQGRIYMAMVSTYF 237


>06_01_0333 +
           2404459-2404857,2404917-2405009,2405428-2405522,
           2406146-2406219,2406307-2406395,2406745-2406858
          Length = 287

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 621 LGVPNSVLSAPNLVLTEKNSKEFIVNLSSFSYICPHL 731
           L V N +L+    +       EF V +S+F+YI PHL
Sbjct: 220 LSVQNRLLNIDENIYIPITKGEFAVIVSTFNYIIPHL 256


>08_02_1417 -
           26922775-26922986,26923102-26923291,26923816-26923928,
           26924032-26924112,26925329-26926661
          Length = 642

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = -2

Query: 174 SSYPVHCYIGST*CNNLFRIALVEQRRRMLHFLP 73
           + + ++CYIGS+  +   +  +VE+ RR+ + +P
Sbjct: 137 NGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMP 170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,422,501
Number of Sequences: 37544
Number of extensions: 412782
Number of successful extensions: 975
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)