Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_C07
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein S28|Schizosa...    60   1e-10
SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein S28|Sc...    60   1e-10
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo...    25   5.6  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    24   9.8  

>SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein
           S28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 68

 Score = 60.5 bits (140), Expect = 1e-10
 Identities = 30/49 (61%), Positives = 36/49 (73%)
 Frame = +3

Query: 81  PNVLARVVQVLGRTGSQGQCXQVXVEFIGXPSRQXIRNVKGPVRDGXIL 227
           P  LA+V++VLGRTGS+G   QV VEF+   SR  IRNVKGPVR+  IL
Sbjct: 7   PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55


>SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein
           S28|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 68

 Score = 60.5 bits (140), Expect = 1e-10
 Identities = 30/49 (61%), Positives = 36/49 (73%)
 Frame = +3

Query: 81  PNVLARVVQVLGRTGSQGQCXQVXVEFIGXPSRQXIRNVKGPVRDGXIL 227
           P  LA+V++VLGRTGS+G   QV VEF+   SR  IRNVKGPVR+  IL
Sbjct: 7   PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55


>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 18  SFGCTLLFIVF-SSLFQAKMXQPNVLARVV 104
           SFGCTL  I+F +S F+ ++ Q   LA  V
Sbjct: 267 SFGCTLYTIMFHASPFEREVSQGGSLALAV 296


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 101 DTSKNVGLXHFGLEERAEDNEQQRATKAG 15
           D S NV +  FGL     D+E+++ T  G
Sbjct: 172 DESNNVKIGDFGLAALLMDDEERKMTICG 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,465,959
Number of Sequences: 5004
Number of extensions: 22391
Number of successful extensions: 45
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)