Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_C07
         (463 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0172 + 13804803-13805293,13805423-13805537,13805766-138058...    37   0.009
07_03_0350 + 17077481-17078225,17078585-17078647,17078773-17078786     31   0.45 
07_03_0111 + 13535912-13535972,13536081-13536142,13536418-135365...    31   0.45 
03_01_0468 - 3612079-3612197,3612679-3612850                           29   1.4  
01_03_0183 + 13543833-13544051,13544161-13544257,13545616-135457...    27   9.7  

>10_07_0172 +
           13804803-13805293,13805423-13805537,13805766-13805831,
           13805921-13806009,13806103-13806193,13806312-13806458,
           13806575-13806667,13806745-13806846,13806957-13807541,
           13808523-13808813,13808866-13808937
          Length = 713

 Score = 36.7 bits (81), Expect = 0.009
 Identities = 20/59 (33%), Positives = 26/59 (44%)
 Frame = -3

Query: 266 SQPPSFTFRFKKSEDXSVTDRSFHVPDXLTAGXPNELDLHLXTLALRTSTAEDLHDTSK 90
           +QPP    R ++ ED ++TDR+  VP   T     EL   L  L      A  LH   K
Sbjct: 605 AQPPGLPLRLEQGEDVALTDRALDVPHDETVLVVEELHSDLGHLTPGAGAAHHLHHDGK 663


>07_03_0350 + 17077481-17078225,17078585-17078647,17078773-17078786
          Length = 273

 Score = 31.1 bits (67), Expect = 0.45
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +3

Query: 30  TLLFIVFSSLFQAKMXQPNVLARVVQVLGRTGSQGQCXQVXVEFIGXP 173
           T+L +VF +LF     QP+   R  QV   T +     Q     +G P
Sbjct: 6   TILLVVFFALFAVSSLQPSAAVRDAQVFKPTVANADVTQPSASLVGLP 53


>07_03_0111 + 13535912-13535972,13536081-13536142,13536418-13536510,
            13537577-13537649,13537876-13538265,13538337-13538404,
            13539334-13539375,13540211-13540735,13540817-13540974,
            13541078-13541636,13542438-13542500,13542579-13542680,
            13542779-13543096,13543175-13543267,13543489-13543590,
            13543678-13543782,13544190-13544323,13545097-13545280,
            13545701-13545832,13546215-13546327,13546468-13546558,
            13547138-13549339
          Length = 1889

 Score = 31.1 bits (67), Expect = 0.45
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = -3

Query: 230  SEDXSVTDRSFHVPDXLTAGXPN-ELDLHLXTLALRTSTAEDLHDTSKNVGLXHFGLEER 54
            SED  V+DR     D  T G PN E  L+   LA   ++ E +  +++N  +  F     
Sbjct: 1468 SEDIKVSDRELDTGDIDTDGSPNDEKSLNGSNLANDHTSQEPVSCSNENAAV-EFAESSN 1526

Query: 53   AEDNEQQRATKAGVFRK 3
            +  +EQ R +   +F +
Sbjct: 1527 SAKDEQSRKSDMEIFEE 1543


>03_01_0468 - 3612079-3612197,3612679-3612850
          Length = 96

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 266 SQPPSFTFRFKKSEDXSVTDRSFHVPDXLTAGXPNELDLHLXTL 135
           ++PP      ++ ED ++++R+  VP   T     ELD HL  L
Sbjct: 10  AKPPGLPLGLEQGEDVALSNRALDVPHDETVLVIQELDSHLGHL 53


>01_03_0183 +
           13543833-13544051,13544161-13544257,13545616-13545707,
           13545928-13546047,13546170-13546355,13546439-13546602,
           13546691-13546769,13548256-13548387,13548560-13548687,
           13548785-13549140,13549211-13549221,13549312-13549431,
           13549510-13549637,13552210-13552260,13553105-13553189,
           13553856-13553954,13555260-13555535
          Length = 780

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = +2

Query: 83  QRSC-SCRASPRPYWFSGP 136
           +RSC  CRA+  P W SGP
Sbjct: 667 RRSCVECRATTTPMWRSGP 685


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,546,959
Number of Sequences: 37544
Number of extensions: 154893
Number of successful extensions: 295
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)