Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_C07
         (463 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58682-1|AAB07066.1|   69|Homo sapiens ribosomal protein S28 pro...    76   7e-14
L05091-1|AAC15855.1|   69|Homo sapiens ribosomal protein S28 pro...    76   7e-14
CR457055-1|CAG33336.1|   69|Homo sapiens RPS28 protein.                76   7e-14
BC070218-1|AAH70218.1|   69|Homo sapiens ribosomal protein S28 p...    76   7e-14
BC070217-1|AAH70217.1|   69|Homo sapiens ribosomal protein S28 p...    76   7e-14
BC021239-1|AAH21239.1|   69|Homo sapiens ribosomal protein S28 p...    76   7e-14
BC000354-1|AAH00354.1|   69|Homo sapiens ribosomal protein S28 p...    76   7e-14
AB061846-1|BAB79484.1|   69|Homo sapiens ribosomal protein S28 p...    76   7e-14
AL023513-1|CAI19979.1|   57|Homo sapiens protein ( Human DNA seq...    38   0.013
AB113647-1|BAD26751.1| 1475|Homo sapiens RGD, leucine-rich repea...    31   1.5  

>U58682-1|AAB07066.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 75.8 bits (178), Expect = 7e-14
 Identities = 36/51 (70%), Positives = 40/51 (78%)
 Frame = +3

Query: 78  QPNVLARVVQVLGRTGSQGQCXQVXVEFIGXPSRQXIRNVKGPVRDGXILT 230
           QP  LARV +VLGRTGSQGQC QV VEF+   SR  IRNVKGPVR+G +LT
Sbjct: 7   QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>L05091-1|AAC15855.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 75.8 bits (178), Expect = 7e-14
 Identities = 36/51 (70%), Positives = 40/51 (78%)
 Frame = +3

Query: 78  QPNVLARVVQVLGRTGSQGQCXQVXVEFIGXPSRQXIRNVKGPVRDGXILT 230
           QP  LARV +VLGRTGSQGQC QV VEF+   SR  IRNVKGPVR+G +LT
Sbjct: 7   QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>CR457055-1|CAG33336.1|   69|Homo sapiens RPS28 protein.
          Length = 69

 Score = 75.8 bits (178), Expect = 7e-14
 Identities = 36/51 (70%), Positives = 40/51 (78%)
 Frame = +3

Query: 78  QPNVLARVVQVLGRTGSQGQCXQVXVEFIGXPSRQXIRNVKGPVRDGXILT 230
           QP  LARV +VLGRTGSQGQC QV VEF+   SR  IRNVKGPVR+G +LT
Sbjct: 7   QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>BC070218-1|AAH70218.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 75.8 bits (178), Expect = 7e-14
 Identities = 36/51 (70%), Positives = 40/51 (78%)
 Frame = +3

Query: 78  QPNVLARVVQVLGRTGSQGQCXQVXVEFIGXPSRQXIRNVKGPVRDGXILT 230
           QP  LARV +VLGRTGSQGQC QV VEF+   SR  IRNVKGPVR+G +LT
Sbjct: 7   QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>BC070217-1|AAH70217.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 75.8 bits (178), Expect = 7e-14
 Identities = 36/51 (70%), Positives = 40/51 (78%)
 Frame = +3

Query: 78  QPNVLARVVQVLGRTGSQGQCXQVXVEFIGXPSRQXIRNVKGPVRDGXILT 230
           QP  LARV +VLGRTGSQGQC QV VEF+   SR  IRNVKGPVR+G +LT
Sbjct: 7   QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>BC021239-1|AAH21239.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 75.8 bits (178), Expect = 7e-14
 Identities = 36/51 (70%), Positives = 40/51 (78%)
 Frame = +3

Query: 78  QPNVLARVVQVLGRTGSQGQCXQVXVEFIGXPSRQXIRNVKGPVRDGXILT 230
           QP  LARV +VLGRTGSQGQC QV VEF+   SR  IRNVKGPVR+G +LT
Sbjct: 7   QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>BC000354-1|AAH00354.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 75.8 bits (178), Expect = 7e-14
 Identities = 36/51 (70%), Positives = 40/51 (78%)
 Frame = +3

Query: 78  QPNVLARVVQVLGRTGSQGQCXQVXVEFIGXPSRQXIRNVKGPVRDGXILT 230
           QP  LARV +VLGRTGSQGQC QV VEF+   SR  IRNVKGPVR+G +LT
Sbjct: 7   QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>AB061846-1|BAB79484.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 75.8 bits (178), Expect = 7e-14
 Identities = 36/51 (70%), Positives = 40/51 (78%)
 Frame = +3

Query: 78  QPNVLARVVQVLGRTGSQGQCXQVXVEFIGXPSRQXIRNVKGPVRDGXILT 230
           QP  LARV +VLGRTGSQGQC QV VEF+   SR  IRNVKGPVR+G +LT
Sbjct: 7   QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>AL023513-1|CAI19979.1|   57|Homo sapiens protein ( Human DNA
           sequence from clone RP1-268D13 on chromosome
           22q11.21-12.2.  ).
          Length = 57

 Score = 38.3 bits (85), Expect = 0.013
 Identities = 18/37 (48%), Positives = 24/37 (64%)
 Frame = +3

Query: 81  PNVLARVVQVLGRTGSQGQCXQVXVEFIGXPSRQXIR 191
           P  L +  +VLGRT SQGQC +V VEF+   S++  R
Sbjct: 8   PVKLVKATKVLGRTSSQGQCTRVCVEFMVSQSKRLRR 44


>AB113647-1|BAD26751.1| 1475|Homo sapiens RGD, leucine-rich repeat,
            tropomodulin and proline-rich containing protein protein.
          Length = 1475

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
 Frame = +2

Query: 50   QLALPSQNGSTQRSCSCRASPRPYWFSGPVXSSXGRVHW--GAQPSXHQERERTGP*RXH 223
            +LA P ++   Q   S R SP P    GP      R+      QP  H  R R  P R H
Sbjct: 1012 ELAAPGEDAEPQAGPSARGSPSPA-APGPPAGPLPRMDLPLAGQPLRHPTRARPRPRRQH 1070

Query: 224  PH 229
             H
Sbjct: 1071 HH 1072


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,337,386
Number of Sequences: 237096
Number of extensions: 859177
Number of successful extensions: 1411
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1411
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3929066862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)