Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_C07
         (463 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal pr...    68   3e-12
U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z70285-1|CAA94288.2|  243|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p...    27   6.5  

>AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 28 protein.
          Length = 65

 Score = 68.1 bits (159), Expect = 3e-12
 Identities = 34/48 (70%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
 Frame = +3

Query: 90  LARVVQVLGRTGSQGQCXQVXVEFIGXP-SRQXIRNVKGPVRDGXILT 230
           LARV +V+GRTGSQGQC QV VEFI    +R  IRNVKGPVR+G ILT
Sbjct: 6   LARVTKVIGRTGSQGQCTQVRVEFINDQNNRSIIRNVKGPVREGDILT 53


>U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical
           protein F09C12.2 protein.
          Length = 418

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 144 QVXVEFIGXPSRQXIRNVKGP-VRD 215
           Q+ +E++G P  Q IR +K P +RD
Sbjct: 267 QLLIEYLGTPDEQVIRRIKSPSIRD 291


>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical protein
            F18C12.2b protein.
          Length = 2271

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 45   VFSSLFQAKMXQPNVLARVVQVLGRTGSQGQCXQVXVEFIG 167
            V ++LF     QP ++ARV+ VL    S GQ  +  +E  G
Sbjct: 1841 VTTTLFTLLRDQPKMIARVLDVLIALSSNGQIGKEMLEHGG 1881


>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical protein
            F18C12.2a protein.
          Length = 2279

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 45   VFSSLFQAKMXQPNVLARVVQVLGRTGSQGQCXQVXVEFIG 167
            V ++LF     QP ++ARV+ VL    S GQ  +  +E  G
Sbjct: 1849 VTTTLFTLLRDQPKMIARVLDVLIALSSNGQIGKEMLEHGG 1889


>Z70285-1|CAA94288.2|  243|Caenorhabditis elegans Hypothetical
           protein F56C4.1 protein.
          Length = 243

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -3

Query: 248 TFRFKKSEDXSVT-DRSFHVPDXLTAGXPNELDLHLXTLALRTSTAEDLHDTSKNVGLXH 72
           ++R  K ++ S T D ++H P+        + DL   ++ +  +++ED    S+ +G  H
Sbjct: 135 SWRNVKIDECSTTNDVTYHCPESAFKDSCTQADLEKCSVRMEINSSEDFFTFSRRLGRSH 194


>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
            protein RME-8 protein.
          Length = 2279

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 45   VFSSLFQAKMXQPNVLARVVQVLGRTGSQGQCXQVXVEFIG 167
            V ++LF     QP ++ARV+ VL    S GQ  +  +E  G
Sbjct: 1849 VTTTLFTLLRDQPKMIARVLDVLIALSSNGQIGKEMLEHGG 1889


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,247,375
Number of Sequences: 27780
Number of extensions: 134078
Number of successful extensions: 245
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)