Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_C06
(629 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.) 149 1e-36
SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07) 66 3e-11
SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 7e-07
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23) 38 0.009
SB_6406| Best HMM Match : Mis12 (HMM E-Value=0.49) 31 0.58
SB_50931| Best HMM Match : Extensin_2 (HMM E-Value=0.14) 30 1.3
SB_14385| Best HMM Match : ANF_receptor (HMM E-Value=6.5e-35) 30 1.3
SB_51387| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_2229| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-25) 29 4.1
SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_48498| Best HMM Match : DUF369 (HMM E-Value=2.4) 28 7.2
SB_41181| Best HMM Match : DUF164 (HMM E-Value=2.1) 28 7.2
SB_5182| Best HMM Match : TSP_1 (HMM E-Value=1.1e-11) 27 9.5
SB_49442| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_25393| Best HMM Match : Collagen (HMM E-Value=0.00015) 27 9.5
SB_5386| Best HMM Match : GRP (HMM E-Value=0.012) 27 9.5
>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 149 bits (362), Expect = 1e-36
Identities = 64/120 (53%), Positives = 85/120 (70%)
Frame = +1
Query: 205 VQGGITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFD 384
+ G I GL G +GFH+H GD + GC+S G HFNP K+HG P+D NRHVGDLGNVV
Sbjct: 30 ITGTIEGLKAGNHGFHIHVYGDNTNGCVSAGPHFNPFKKEHGGPSDENRHVGDLGNVVAG 89
Query: 385 ENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGKSDHPDSRKTGNAGGRVACGVIG 564
++ + ID+ D ++L G H ++GR+VV+H DD G+ H DS+ TG+AGGR+ACGVIG
Sbjct: 90 DDGKACIDMTDALVTLVGEHSVVGRSVVVHADEDDLGRGGHEDSKTTGHAGGRLACGVIG 149
>SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)
Length = 100
Score = 65.7 bits (153), Expect = 3e-11
Identities = 30/70 (42%), Positives = 43/70 (61%)
Frame = +1
Query: 352 HVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGKSDHPDSRKTGN 531
HVGDLGN++ ++N + D + + IIGRA+V+H DD G+ H S+ TGN
Sbjct: 1 HVGDLGNIIANQNGRATFRFEDKTVKV---WDIIGRAIVVHADEDDLGRGGHELSKSTGN 57
Query: 532 AGGRVACGVI 561
+G RV CG+I
Sbjct: 58 SGARVGCGII 67
>SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 51.2 bits (117), Expect = 7e-07
Identities = 22/48 (45%), Positives = 32/48 (66%)
Frame = +1
Query: 325 HGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVV 468
HG P D +RH+GDLGN+ D N + + + D +SL+G IIGR++V
Sbjct: 2 HGAPEDKDRHLGDLGNIEADANGIADVSITDCLVSLTGQCSIIGRSLV 49
>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
Length = 1531
Score = 37.5 bits (83), Expect = 0.009
Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 13/125 (10%)
Frame = +1
Query: 136 AVLSTETIRGNITFTQVQ-DGKVHVQGGITGLPPGEYGFHVHE-----KGDLSGGC--LS 291
A S IRG +TFTQ + +++ +TG+ + +H+ KG+ + C ++
Sbjct: 59 ATFSMSGIRGTVTFTQSSPNTSTNIKLALTGVNE-TLSWQIHDLPVIYKGNAATTCNTVA 117
Query: 292 TGSHFNPEHKDHGHPNDVNRH---VGDL-GNVVF-DENHYSRIDLVDDQISLSGPHGIIG 456
G+ ++P+ + + VGDL G F D N+ S + D + L+G HGI G
Sbjct: 118 LGNLYDPDGTATAQCSAAQKKSCAVGDLRGKFGFIDGNNMSSV-FHDSNLPLTGRHGIFG 176
Query: 457 RAVVL 471
R +VL
Sbjct: 177 RTLVL 181
>SB_6406| Best HMM Match : Mis12 (HMM E-Value=0.49)
Length = 714
Score = 31.5 bits (68), Expect = 0.58
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = -2
Query: 538 RQRCRSSWSPDGHSCRNHQLSHGAPPLCR*CRADPIARSGRLPSRS 401
RQRCRS P H LS PP+ R A P+ R RS
Sbjct: 502 RQRCRSEGLPTSERAPRHYLSKRQPPVWRLDLAQPVGPPPRDSVRS 547
>SB_50931| Best HMM Match : Extensin_2 (HMM E-Value=0.14)
Length = 348
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 223 GLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDV 345
GLPPG G +V + G L G+H + +H PN+V
Sbjct: 307 GLPPGNPGQYVTPQ-PRHAGLLENGNHVSEQHNKQTPPNNV 346
>SB_14385| Best HMM Match : ANF_receptor (HMM E-Value=6.5e-35)
Length = 1003
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +1
Query: 148 TETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTGSH 303
+E + N T DG+V V+ +TG G + E+ DL+ G ++ SH
Sbjct: 395 SEILHFNYTIYMSPDGRVGVENPVTGNWDGVINELIQERADLAVGPITITSH 446
>SB_51387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 388 NHYSRIDLVDDQISLSGPHGIIG-RAVVLHEKADDYGKSDHP 510
NH+S L + +L GP+ G R +++++K D Y K D P
Sbjct: 111 NHHSTGILKCQRANLKGPNLCAGKRRILIYDKYDKYDKYDFP 152
>SB_2229| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-25)
Length = 419
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +1
Query: 250 HVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRID 408
+V DL G L G+H HG+ ND+N V N + E++ + D
Sbjct: 348 NVPSVADLPNGQLHHGNHNINGPLFHGNNNDLNGQVSQRNNYNYSEDYLHQCD 400
>SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1653
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 324 PRSSERCQPSRRRPWKRG-L*REPLQQDRLG-RRPDLAIGSARHHRQSGGAP 473
PRS ER RP +RG R P +++R G RRP A +R + G P
Sbjct: 621 PRSRERSDRRDERPQRRGSRGRSPGRREREGERRPRSAERQSRRQDEPKGEP 672
>SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 794
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 295 GSHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQIS 429
G+H N H HP++V+ L V +N S + D+Q S
Sbjct: 617 GNHLNTVHTPDNHPSNVHTPDNHLNTVHTPDNQPSTVHTPDNQPS 661
Score = 27.5 bits (58), Expect = 9.5
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = +1
Query: 232 PGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDL 411
PG + +VH D LST +H H P+ V+ L V +NH S +
Sbjct: 577 PGNHPSNVHTP-DNHTKTLSTHQTTTQKHCPHTQPSTVHTPGNHLNTVHTPDNHPSNVHT 635
Query: 412 VDDQIS 429
D+ ++
Sbjct: 636 PDNHLN 641
>SB_48498| Best HMM Match : DUF369 (HMM E-Value=2.4)
Length = 734
Score = 27.9 bits (59), Expect = 7.2
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +2
Query: 137 PFYPQKR--LEATSHLLRFKMGRFTFREASLGCLRVNTVSTSMRRAT*AAVVYRLDHISI 310
P PQ R T R+K + + + GC R VS+ ++ + VVYRL
Sbjct: 538 PARPQYRDAFVVTRSTYRYKQCKGKAKRSHCGCTRATKVSSLVQHSDCIEVVYRLLFDEK 597
Query: 311 LNIRTTVIR 337
L R V+R
Sbjct: 598 LTPRFLVLR 606
>SB_41181| Best HMM Match : DUF164 (HMM E-Value=2.1)
Length = 258
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 178 TQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLS 291
T V +G +HVQ +T +P G E D+ GC++
Sbjct: 58 TDVPEGSIHVQEEMTDVPKGSINVQ-EEITDVPEGCIN 94
>SB_5182| Best HMM Match : TSP_1 (HMM E-Value=1.1e-11)
Length = 1417
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 556 HRKRLDRQRCRSSWSPDGHSCRNHQ 482
H +R+ Q C + P+ HSCR+ Q
Sbjct: 605 HGERILEQECNTDPCPEAHSCRHIQ 629
>SB_49442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 914
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 529 CRSSWSPDGHSCRNHQLSHGAPP 461
C S++ DG R H+L+H PP
Sbjct: 722 CTRSFAVDGKCRRKHELTHDPPP 744
>SB_25393| Best HMM Match : Collagen (HMM E-Value=0.00015)
Length = 391
Score = 27.5 bits (58), Expect = 9.5
Identities = 23/62 (37%), Positives = 27/62 (43%)
Frame = +1
Query: 208 QGGITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDE 387
Q G TG PPGEYG++ G G G H P K P D N ++ G D
Sbjct: 91 QKGPTG-PPGEYGYNGF-PGSRHGQSGFPGLHGPPGPKG---PAD-NPYITTSGQQALDN 144
Query: 388 NH 393
NH
Sbjct: 145 NH 146
>SB_5386| Best HMM Match : GRP (HMM E-Value=0.012)
Length = 800
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = +1
Query: 235 GEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRHVGDL 366
G+YG H GDL G G + H DH + H DL
Sbjct: 398 GDYGDGDHGDGDLFNGDRDHGDGGDRHHGDHSDGDGWQAHSRDL 441
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.138 0.424
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,547,983
Number of Sequences: 59808
Number of extensions: 439196
Number of successful extensions: 987
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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