Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_C05
(599 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064) 30 1.2
SB_50061| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_8055| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_21904| Best HMM Match : Vinculin (HMM E-Value=0) 29 2.9
SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_18505| Best HMM Match : GETHR (HMM E-Value=0.025) 28 6.6
SB_20375| Best HMM Match : fn3 (HMM E-Value=3e-35) 27 8.8
SB_58111| Best HMM Match : fn3 (HMM E-Value=0) 27 8.8
>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2323
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/53 (43%), Positives = 28/53 (52%)
Frame = +1
Query: 418 GTTPDFHASFFESKTLAPQANTTFSVVYLGRHEGPASAHLYIHTSLGVFKYPV 576
G D S + + P NTTF VV+L R G A L+IHTS GV+ Y V
Sbjct: 727 GDMGDLRFSGGHVEVVQPVGNTTFDVVFLARLIGSAENTLFIHTSKGVYPYQV 779
>SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)
Length = 1064
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Frame = +1
Query: 322 LEFGRAALAEP-HARRVTLTNLANTTIHLA--SVAGTTPDFHASFFESKTLAPQANTTFS 492
++FG+ L E + +T+ N + T + + S P+F F K A +
Sbjct: 156 IDFGKRLLTEDTNIIEITINNTSTTQVKIKRFSTLEEVPEFS---FSDKHGLTNARKNYK 212
Query: 493 VVYLGRHEGPASAHLYIHTSLGVFKYPVSAE 585
++ + ++ + ++ TSLGVFK P+ E
Sbjct: 213 IITIPVNKQYQISAVFKPTSLGVFKLPIVFE 243
>SB_50061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1222
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Frame = +1
Query: 325 EFGRAALAEPHARRVTLTNLANTTIHLASVAGTTPDFHASFF------ESKTLAPQANTT 486
E+ RA + H R +LA H A TTPD HA+ L Q+ T+
Sbjct: 365 EWKRARFRD-HPRVPITISLARKGRHRKETADTTPDIHAAVSAIADTGAQSDLCGQSTTS 423
Query: 487 FSVVYL 504
FS+VY+
Sbjct: 424 FSMVYV 429
>SB_8055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 274
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -1
Query: 206 LFPWADSLVFNEISNKVNTNT*HHTILRYI-LNEIFVT*HCLFTFLPALLVVFSTTTHKT 30
L P D L+ N++ K ++N + + I L +FV+ H L+T A+ + ST +K
Sbjct: 8 LGPLGDDLLENQVRTKCHSNL---LLCQNIPLRAMFVSEHVLYTVFSAITWLDSTACNKA 64
Query: 29 C 27
C
Sbjct: 65 C 65
>SB_21904| Best HMM Match : Vinculin (HMM E-Value=0)
Length = 999
Score = 29.1 bits (62), Expect = 2.9
Identities = 32/124 (25%), Positives = 47/124 (37%), Gaps = 4/124 (3%)
Frame = +1
Query: 190 SAQGKSHGVTLHDS---LIEGISFQEWGSEAGDSKRGAEGIWLQPPSLEFGRAALAEPHA 360
S + H V + DS I F S GD + A+ + +L R L
Sbjct: 826 SPMQRGHNVVILDSAGNFIMATHFDTADSTKGDGAKMAKFL----DNLPKERMVLMATQG 881
Query: 361 RRVTLTNLANTTIHLASVAGTT-PDFHASFFESKTLAPQANTTFSVVYLGRHEGPASAHL 537
T N A ++++ G P FHAS+ + P+ V R+EGPA +
Sbjct: 882 TTGTAVNDAKSSLYNLGAQGNVHPGFHASWAFAGYTGPENVKWAKTVTKARYEGPAVINE 941
Query: 538 YIHT 549
I T
Sbjct: 942 MITT 945
>SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1422
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Frame = +1
Query: 196 QGKSHGVTLHDSLIEGISFQE----WGSEAGDSKRGAEGIWLQPPSLEFGRAALAEPHAR 363
+G H + H+S EG + AG+ R EG W + L F LA+ R
Sbjct: 1246 EGHVHPYSYHNSRFEGFPYSRDMIVTSMSAGERGRAVEGEWPRHGRLMFVNGDLADVEMR 1305
Query: 364 R 366
R
Sbjct: 1306 R 1306
>SB_18505| Best HMM Match : GETHR (HMM E-Value=0.025)
Length = 380
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -3
Query: 159 GQHKYVTPHNFTIHFKRNIRNVTLFIHISACTSRCFFNNNSQDMHS 22
GQ++ + H T+ N +N L H T RC+ N +Q +H+
Sbjct: 25 GQNQALHNHTLTVRCYENGQNQVLHNH--TLTVRCYENGQNQALHN 68
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -3
Query: 159 GQHKYVTPHNFTIHFKRNIRNVTLFIHISACTSRCFFNNNSQDMHS 22
GQ++ + H T+ N +N L H T RC+ N +Q +H+
Sbjct: 43 GQNQVLHNHTLTVRCYENGQNQALHNH--TLTVRCYKNGQNQVLHN 86
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -3
Query: 159 GQHKYVTPHNFTIHFKRNIRNVTLFIHISACTSRCFFNNNSQDMHS 22
GQ++ + H T+ N +N L H T RC+ N +Q +H+
Sbjct: 7 GQNQSLHNHTLTVRCYENGQNQALHNH--TLTVRCYENGQNQVLHN 50
>SB_20375| Best HMM Match : fn3 (HMM E-Value=3e-35)
Length = 320
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = +1
Query: 367 VTLTNLANTTIHLASVAGTTPDFHASFFESKTLAPQANTTFSVVYLGRHEGPASAHLYIH 546
+T +N T+ A+ + T S E L N + V+ + RHEG S +Y H
Sbjct: 256 LTSNATSNATLGHANYSHVTVPETQSSVELTGLRRYTNYSLRVMGVTRHEGVMSQPIYAH 315
Query: 547 T 549
T
Sbjct: 316 T 316
>SB_58111| Best HMM Match : fn3 (HMM E-Value=0)
Length = 934
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = +1
Query: 367 VTLTNLANTTIHLASVAGTTPDFHASFFESKTLAPQANTTFSVVYLGRHEGPASAHLYIH 546
+T +N T+ A+ + T S E L N + V+ + RHEG S +Y H
Sbjct: 256 LTSNATSNATLGHANYSHVTVPETQSSVELTGLRRYTNYSLRVMGVTRHEGVMSQPIYAH 315
Query: 547 T 549
T
Sbjct: 316 T 316
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,742,741
Number of Sequences: 59808
Number of extensions: 347533
Number of successful extensions: 1060
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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