Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_C04
         (731 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)             150   1e-36
SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35)            71   7e-13
SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)              64   8e-11
SB_25136| Best HMM Match : Thiolase_N (HMM E-Value=4.4e-09)            33   0.32 
SB_57005| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_44112| Best HMM Match : PA14 (HMM E-Value=5e-05)                    29   2.9  
SB_36506| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)                    28   9.0  
SB_46808| Best HMM Match : Paramecium_SA (HMM E-Value=4.2)             28   9.0  
SB_42687| Best HMM Match : UPF0262 (HMM E-Value=2.1)                   28   9.0  
SB_7259| Best HMM Match : ResIII (HMM E-Value=0.21)                    28   9.0  
SB_50233| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_27146| Best HMM Match : LIM (HMM E-Value=9.7)                       28   9.0  
SB_21674| Best HMM Match : LIM (HMM E-Value=0.44)                      28   9.0  

>SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score =  150 bits (364), Expect = 1e-36
 Identities = 78/206 (37%), Positives = 115/206 (55%), Gaps = 1/206 (0%)
 Frame = +3

Query: 96  EVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVCSANLG 275
           +V+IA AVRTP+                   V  A+ RA I   ++ EV +G V +A  G
Sbjct: 9   DVIIACAVRTPVGSHNGDLSSLKAHELGSIVVKEALCRASISPCDVSEVILGQVLTAGQG 68

Query: 276 QAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSNVP 455
           Q PARQA I AG+P       VN +C SG+K++ L  Q +  G  +I++AGG ESMS  P
Sbjct: 69  QGPARQAAIHAGIPACVPAYGVNMLCGSGLKAVALGYQAVAMGDSNIVVAGGQESMSQAP 128

Query: 456 FYL-KRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITXQDQDEYAVNSY 632
                R    +G M L+D ++ DGL D +N +HMG  AEN AK+ +++ ++QD +A+ S 
Sbjct: 129 HCCHMRPALKFGDMTLIDTMLKDGLMDSFNNYHMGITAENVAKQWEVSREEQDNFALTSQ 188

Query: 633 KRSAAAYEAKAFVDELVPVPVPXKRG 710
           +R+  A +A  F DE+V V +  + G
Sbjct: 189 QRTETAQKAGYFSDEIVTVSIKTRAG 214


>SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35)
          Length = 415

 Score = 71.3 bits (167), Expect = 7e-13
 Identities = 31/60 (51%), Positives = 45/60 (75%), Gaps = 1/60 (1%)
 Frame = +3

Query: 555 GNCAENTAKKLQITXQDQDEYAVNSYKRSAAAYEAKAFVDELVPVPVPXKRGAP-VIFAE 731
           G CAEN A K  IT ++QD+YA++SY+R+AAA++A  F  E+VPV +P K+G P ++F E
Sbjct: 59  GVCAENAASKYNITREEQDDYAIHSYRRTAAAWDAGKFKQEVVPVNIPQKKGKPDIVFEE 118



 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 35/60 (58%), Positives = 40/60 (66%), Gaps = 11/60 (18%)
 Frame = +3

Query: 270 LGQAPARQAVIFAG-----------LPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDI 416
           +GQAPARQA + AG           LP ST CTT+NKVCASGMKSIM AAQ L  G+Q +
Sbjct: 1   MGQAPARQAALGAGTRXVTSIRDQALPISTPCTTINKVCASGMKSIMAAAQSLMCGSQGV 60


>SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 64.5 bits (150), Expect = 8e-11
 Identities = 37/80 (46%), Positives = 52/80 (65%)
 Frame = +3

Query: 489  GMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITXQDQDEYAVNSYKRSAAAYEAKAF 668
            G Q+ D + + GLTD+     MG  AEN A+K  IT ++ D++A+ S +R AAA+E+ AF
Sbjct: 799  GAQMEDTL-WQGLTDMLPGLPMGITAENLAEKYNITREECDQFALLSQQRWAAAHESGAF 857

Query: 669  VDELVPVPVPXKRGAPVIFA 728
              E+VPVPV  K+G P  FA
Sbjct: 858  TAEIVPVPVKGKKG-PEQFA 876


>SB_25136| Best HMM Match : Thiolase_N (HMM E-Value=4.4e-09)
          Length = 162

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 552 MGNCAENTAKKLQITXQDQDEYAVNSYKRSAAAYEAKAFVDEL 680
           MG+ A+  A    ++ Q+QDEYA+ S+  +  A +A    D L
Sbjct: 13  MGHSADRLASAFHVSRQEQDEYALRSHTLAHQATQAGKLTDVL 55


>SB_57005| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = -1

Query: 497 LHSSIRSFTSLQIKRYI*HRFHPTSKYYILGSSL*TLCCQ-HYRFHARGTYFVYSCTYGT 321
           +HS+ R+  +    RY     H T     + S+  TLC Q H R+  + T+ +YS T+  
Sbjct: 102 MHSNTRTLCTKTHARYALKHTHTT-----MHSNTRTLCTQTHARYALKHTHTMYSNTHTL 156

Query: 320 FWQTCKYYSL 291
             QT  +Y+L
Sbjct: 157 CTQTHAHYAL 166


>SB_44112| Best HMM Match : PA14 (HMM E-Value=5e-05)
          Length = 1433

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
 Frame = +3

Query: 504  DGIVFDGLTDVYNKFHMGNCAENTAKKLQITXQDQDEYAVNSYKRSAAAYE-------AK 662
            DG+VFD   ++ +   M  C+ N  K   +  Q   E+   +Y R +A          A 
Sbjct: 1214 DGVVFDAAIELAHPSDMWVCSTN--KMGALVQQRLIEHHRKNYPRLSATIRFDPDPSVAH 1271

Query: 663  AFVDELVPVPVPXKRGAPV 719
             +  +  PVPVP KRG  V
Sbjct: 1272 RYRKQERPVPVPGKRGEKV 1290


>SB_36506| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 198

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +2

Query: 248 WQCLFCKFGPSTCKTSCNICRFAKKY-HMYNCK-QSMCLWHEIYNVGSTR 391
           W+C   K  PS  ++   +  F KKY H +    +S  LW+  Y + + R
Sbjct: 80  WECEHVKPVPSDVRSKMRLSGFYKKYLHAFGIPVRSNTLWYRTYAMSTDR 129


>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 248 WQCLFCKFGPSTCKTSCNICRFAKKYHMYNCKQSMCL 358
           WQ  + + GP   KTSC +C    KY++ N     CL
Sbjct: 864 WQSNYTQCGPCASKTSCPVCNI--KYNL-NDLMIQCL 897


>SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 220

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 27/102 (26%), Positives = 41/102 (40%)
 Frame = +3

Query: 201 IERAGIPKEEIKEVYIGNVCSANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIML 380
           I + GI  EEI      +V  A +        + + G PKS +CT+VN+V   G+ +   
Sbjct: 72  IVKVGITTEEIDY----HVHKAIIEHGAYPSPLNYRGFPKS-VCTSVNEVAVHGIPNSRC 126

Query: 381 AAQGLQTGAQDIILAGGMESMSNVPFYLKRGETSYGGMQLVD 506
              G        +  GG+       F +  G     G +LVD
Sbjct: 127 LQNGDLLSVDISLFYGGVHGDLCETFLV--GNVDESGRRLVD 166


>SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)
          Length = 1266

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 532 SVSPSNTIPSTNCIPPYEVSP 470
           +++PSNT+P TNC P  E +P
Sbjct: 928 ALNPSNTVP-TNCCPSGETTP 947


>SB_46808| Best HMM Match : Paramecium_SA (HMM E-Value=4.2)
          Length = 191

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +3

Query: 255 VCSANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDI 416
           VCSA LG +PA+  V FA L      T         + SIM +   +Q  ++ +
Sbjct: 67  VCSAELGVSPAKLCVSFAELIIGDSLTVDQAKAQMAIWSIMASNNAIQVWSRPL 120


>SB_42687| Best HMM Match : UPF0262 (HMM E-Value=2.1)
          Length = 908

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
 Frame = +3

Query: 504 DGIVFDGLTDVYNKFHMGNCAENTAKKLQITXQDQDEYAVNSYKRSAAAYE-------AK 662
           DG+ FD   +  +  +M  C+ N    L    Q   E+   +Y R  A          A 
Sbjct: 564 DGVAFDAAIEQAHSSYMWVCSTNKIGAL--VQQRLIEHHRKNYPRLPATIRFDPDPSVAH 621

Query: 663 AFVDELVPVPVPXKRGAPVI 722
            +  +  PVPVP KRG  V+
Sbjct: 622 CYRKQGRPVPVPGKRGEKVV 641


>SB_7259| Best HMM Match : ResIII (HMM E-Value=0.21)
          Length = 956

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
 Frame = +3

Query: 504 DGIVFDGLTDVYNKFHMGNCAENTAKKLQITXQDQDEYAVNSYKRSAAAYE-------AK 662
           DG+ FD + D  +   M  C+ N  K   +  Q   E+   +Y R  A          A 
Sbjct: 735 DGVAFDAVIDQAHPSDMWVCSTN--KMGALVQQRLVEHHRKNYPRLPATIRFDPDPSVAH 792

Query: 663 AFVDELVPVPVPXKRGAPV 719
            +  +  PVPVP KRG  V
Sbjct: 793 RYRKQGRPVPVPGKRGEKV 811


>SB_50233| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 967

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
 Frame = +3

Query: 504 DGIVFDGLTDVYNKFHMGNCAENTAKKLQITXQDQDEYAVNSYKRSAAAYE-------AK 662
           DG+ FD   +  +   M  C+ N  K   +  Q   E+   +Y R  A          A 
Sbjct: 707 DGVAFDAAIEQAHPSDMWVCSTN--KMGALVQQQLVEHHRKNYPRLPAIIRFDPDPSVAH 764

Query: 663 AFVDELVPVPVPXKRGAPV 719
            +  +  PVPVP KRGA V
Sbjct: 765 RYRKQGRPVPVPGKRGAKV 783


>SB_27146| Best HMM Match : LIM (HMM E-Value=9.7)
          Length = 296

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
 Frame = +3

Query: 504 DGIVFDGLTDVYNKFHMGNCAENTAKKLQITXQDQDEYAVNSYKRSAAAYE-------AK 662
           DG+ FD + D  +   M  C+ N  K   +  Q   E+   +Y R  A          A 
Sbjct: 102 DGVAFDAVIDQAHPSDMWVCSTN--KMGALVQQRLVEHHRKNYPRLPATIRFDPDPSVAH 159

Query: 663 AFVDELVPVPVPXKRGAPV 719
            +  +  PVPVP KRG  V
Sbjct: 160 RYRKQGRPVPVPGKRGEKV 178


>SB_21674| Best HMM Match : LIM (HMM E-Value=0.44)
          Length = 885

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
 Frame = +3

Query: 504 DGIVFDGLTDVYNKFHMGNCAENTAKKLQITXQDQDEYAVNSYKRSAAAYE-------AK 662
           DG+ FD   +  ++  M  C+ N  K   +  Q   E+ +  Y R  A          A 
Sbjct: 664 DGVAFDAAIEQAHRSDMWVCSTN--KMGALVQQRLVEHHMKKYPRLPATIRFDPDPSVAH 721

Query: 663 AFVDELVPVPVPXKRGAPV 719
            +  +  PVPVP KRG  V
Sbjct: 722 RYRKQGRPVPVPGKRGEKV 740


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,120,228
Number of Sequences: 59808
Number of extensions: 429647
Number of successful extensions: 1248
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)