Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_C03
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41996-1|AAA83471.2|  306|Caenorhabditis elegans Serpentine rece...    28   4.4  
U41007-18|AAA82262.2|  295|Caenorhabditis elegans Hypothetical p...    28   4.4  
AF067607-2|AAF98611.1|  109|Caenorhabditis elegans Hypothetical ...    28   5.9  

>U41996-1|AAA83471.2|  306|Caenorhabditis elegans Serpentine
           receptor, class sx protein22 protein.
          Length = 306

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +1

Query: 340 FYCLYHLKY*LIIFVDYFRFTKRLCF 417
           FYC+Y ++  +++ ++ +  T  LCF
Sbjct: 55  FYCIYFIQLRVMMIMEIYNITNNLCF 80


>U41007-18|AAA82262.2|  295|Caenorhabditis elegans Hypothetical
           protein C33H5.1 protein.
          Length = 295

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 312 NKNILKNI-MILLFISFEILINNFRGLLSIYKTPLFLSVFFFSCQLP 449
           N+N+ KNI ++++ IS  +LI NF       + PLF +  F+ C  P
Sbjct: 4   NRNLTKNIVLVMILISSLLLIINFLSDRYEERRPLFDA--FYECAYP 48


>AF067607-2|AAF98611.1|  109|Caenorhabditis elegans Hypothetical
           protein C18H7.5 protein.
          Length = 109

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +2

Query: 398 LQNAFVFE-CFFFLMSTTIL*MFADKIQEVRIMNRFSYLIF--FLF*V*NKLY 547
           LQN   F+ CF       ++   + K Q ++I+ RF+ + F  F F   NKLY
Sbjct: 49  LQNLAGFKFCFQIAQQILVIYRVSQKCQNMKILKRFNKIDFQKFFFDFPNKLY 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,487,882
Number of Sequences: 27780
Number of extensions: 198364
Number of successful extensions: 554
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)