Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_C02
(744 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 49 6e-07
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 29 0.70
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 29 0.92
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 28 1.2
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 27 3.7
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 27 3.7
SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding... 26 4.9
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 26 4.9
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 26 4.9
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 26 6.5
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 26 6.5
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 49.2 bits (112), Expect = 6e-07
Identities = 24/52 (46%), Positives = 31/52 (59%)
Frame = +2
Query: 584 NTGINFSKYEDIPVEASGDRVPXCITSFEDVNLTELMRTNISLARYDKPTPV 739
+TGINF KY+DIPVE SG + + F L + NI L+ Y +PTPV
Sbjct: 145 STGINFEKYDDIPVEVSGGDIEP-VNEFTSPPLNSHLLQNIKLSGYTQPTPV 195
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 29.1 bits (62), Expect = 0.70
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = +2
Query: 110 QKNVPLGSNMSNVTNQNGTGLEQQLAGLDLQPQAPKSTG-RYIPPHLRRQ---LQATSDQ 277
+K L + +V +Q + L AGL+ Q+P ++G +Y H LQA D
Sbjct: 36 KKESSLSAQQPHVDDQRSSLLSLLNAGLNASNQSPSNSGPKYYASHSSSTDALLQAFRDG 95
Query: 278 GRDSGSQNGEPPERWNESE 334
+ SG+ +G +R ++SE
Sbjct: 96 AKPSGTASGADVKR-SDSE 113
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 28.7 bits (61), Expect = 0.92
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Frame = +2
Query: 404 EPPAPRNDRWKEPEPRAEERSNSRWPSDDVRRTRSRKDENDWTVPLPRDERQELLLFGTG 583
EP +D+ E + E+ + ++ ++ +ND T+P P E + T
Sbjct: 142 EPVVDEDDKLSEEDLSKEDLETTLKGDENYSSSQKEIYDNDETIPKPPSPEVEKIETSTS 201
Query: 584 --NTGINFSKYED-IPVEASGDRVPXCITSFEDVN 679
N I S+Y D + +E D+ IT+FE N
Sbjct: 202 VENAYITNSQYNDTLDME---DQTSDLITTFEHEN 233
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 413 APRNDRWKEPEPRAEERSNSRWPSDDVR 496
APR R+ E +ERS SR P+ D R
Sbjct: 39 APRESRYYRKEEHLQERSRSRSPARDSR 66
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 26.6 bits (56), Expect = 3.7
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 315 SVGMNPRNGMIVNANGTDAGLATCDVRRIMNHRHH 419
SV NP N I+ TD +A D+R +N R H
Sbjct: 286 SVAFNPHNDFILATCSTDKTIALWDLRN-LNQRLH 319
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 26.6 bits (56), Expect = 3.7
Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Frame = +2
Query: 455 EERSNSR--WPSDDVRRTRSRKD-ENDWTVPLPRD--ERQELLLFGTGNTGINFSKYEDI 619
++R R + SD +KD +N+ +P +D + E + + + K ++I
Sbjct: 51 DQRGQGRNFYESDGPGANLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEI 110
Query: 620 PVEASGDRVPXCITSFEDVNLTELMRTNISLARYDKPTPV 739
V G VP +T+FE+ + + ++ PTP+
Sbjct: 111 VVH--GLNVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPI 148
>SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding
protein Ssb2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 279
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 556 TGTIAVRHWQHRDQFLQI 609
TG I VRHW+H D ++
Sbjct: 104 TGMIEVRHWEHIDALSEL 121
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 489 MCAELDLAKTRMIGQYRYLAMNDRNYCCSALATPGSISPNTRI 617
M AE+D A+ GQ+R L + CS L + ++RI
Sbjct: 859 MVAEVDRAEALKSGQFRPLVRKEIEEHCSLLGLDAELVSHSRI 901
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 160 ILVGNITHITTKRYVFLGTLLQKYLKHSLQ*ILH 59
+L IT T + Y+F+G + + LKH + +H
Sbjct: 1019 MLTSGITGETLEAYIFMGPIYYQKLKHMVMDKMH 1052
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 25.8 bits (54), Expect = 6.5
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Frame = +2
Query: 464 SNSRWPSDDVRRTRSRKDENDWTVPLPRDERQELLLFGTGNTGINFSKYEDIPV------ 625
SNS D + + S + ND+TV RQ + F G N + +PV
Sbjct: 134 SNSPQAFDLTQGSSSTHNANDFTVNNVGSRRQSIYEFNIGIPSSNIDSSQFLPVSRAIAA 193
Query: 626 -EASGDRVPXCITSF 667
E S P +TSF
Sbjct: 194 SEISPSSSPQLLTSF 208
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 209 APKSTGRYIPPHLRRQLQATSDQG 280
AP + G++IPP + ++L D G
Sbjct: 189 APVNAGKFIPPGVGKRLATVDDSG 212
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,003,031
Number of Sequences: 5004
Number of extensions: 63881
Number of successful extensions: 209
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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