Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_C02
(744 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0365 - 33399422-33399925,33400470-33400583,33400762-334009... 66 3e-11
07_01_0725 - 5532803-5533324,5533631-5533657,5534285-5534398,553... 61 8e-10
11_06_0300 + 22095396-22096145,22096261-22096344,22097062-220973... 60 1e-09
06_03_0674 + 23422004-23422552,23423295-23423369,23424360-234244... 42 4e-04
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 37 0.015
06_01_0169 - 1346281-1349188,1350069-1350184 32 0.55
11_04_0239 + 15235280-15235375,15236054-15236218 31 0.73
02_02_0539 - 11315788-11315841,11316620-11316700,11316728-11317711 31 0.73
01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-51... 31 0.73
03_06_0691 + 35576319-35576702,35576803-35576885,35576972-355770... 31 0.97
07_02_0020 - 11897013-11897168,11897521-11897637,11898141-118981... 31 1.3
01_06_0766 - 31820168-31820509,31821898-31822110,31822330-318224... 30 1.7
12_02_1211 - 27033927-27034029,27034130-27034273,27034358-270344... 29 3.9
04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414 29 3.9
08_02_0526 + 18184146-18184168,18184247-18184438,18184846-181849... 29 5.2
07_03_0487 - 18663890-18663964,18664286-18664441,18664693-186652... 29 5.2
11_04_0254 - 15377689-15378357,15378807-15379241,15380326-153803... 28 6.8
06_03_0411 - 20520823-20521674 28 6.8
06_03_0383 - 20154045-20154712,20154969-20155122,20155780-201558... 28 6.8
02_01_0624 - 4681834-4682298,4684250-4684398,4684479-4684557,468... 28 6.8
07_03_0814 + 21700274-21701923,21702282-21702434,21702563-217026... 28 9.0
02_04_0448 - 23001579-23001683,23001783-23002382,23002479-230026... 28 9.0
01_01_0682 - 5244805-5244919,5246468-5246613,5246813-5246994,524... 28 9.0
>03_06_0365 -
33399422-33399925,33400470-33400583,33400762-33400929,
33401305-33401547,33402148-33402231,33402323-33403098,
33404423-33404636
Length = 700
Score = 66.1 bits (154), Expect = 3e-11
Identities = 29/56 (51%), Positives = 37/56 (66%)
Frame = +2
Query: 572 FGTGNTGINFSKYEDIPVEASGDRVPXCITSFEDVNLTELMRTNISLARYDKPTPV 739
F T NTGINF YEDIPVE SG VP + +F +++L + + NI +Y KPTPV
Sbjct: 208 FDTANTGINFDAYEDIPVETSGHDVPPPVNTFAEIDLGDALNENIRRCKYVKPTPV 263
>07_01_0725 -
5532803-5533324,5533631-5533657,5534285-5534398,
5534564-5534731,5535951-5536193,5537178-5537261,
5537357-5538117,5539637-5539730,5540633-5540899,
5541311-5541316,5542538-5542657
Length = 801
Score = 61.3 bits (142), Expect = 8e-10
Identities = 31/68 (45%), Positives = 39/68 (57%)
Frame = +2
Query: 536 PLPRDERQELLLFGTGNTGINFSKYEDIPVEASGDRVPXCITSFEDVNLTELMRTNISLA 715
P E E+ G NTGINF YEDIPVE SG VP +F +++L + + NI
Sbjct: 283 PFANSEAAEVDFEGE-NTGINFEAYEDIPVETSGHDVPPPANTFAEIDLGDALNENIRRC 341
Query: 716 RYDKPTPV 739
+Y KPTPV
Sbjct: 342 KYVKPTPV 349
>11_06_0300 +
22095396-22096145,22096261-22096344,22097062-22097304,
22098535-22098702,22098895-22099008,22099378-22099890
Length = 623
Score = 60.5 bits (140), Expect = 1e-09
Identities = 26/52 (50%), Positives = 35/52 (67%)
Frame = +2
Query: 584 NTGINFSKYEDIPVEASGDRVPXCITSFEDVNLTELMRTNISLARYDKPTPV 739
NTGINF YEDIPVE SG VP + +F +++L + + NI +Y +PTPV
Sbjct: 130 NTGINFDAYEDIPVETSGREVPPPVGTFAEIDLGQALNDNIRRCKYVRPTPV 181
>06_03_0674 +
23422004-23422552,23423295-23423369,23424360-23424443,
23424749-23424991,23425348-23425515,23425608-23425727,
23426372-23427016
Length = 627
Score = 42.3 bits (95), Expect = 4e-04
Identities = 21/45 (46%), Positives = 26/45 (57%)
Frame = +2
Query: 605 KYEDIPVEASGDRVPXCITSFEDVNLTELMRTNISLARYDKPTPV 739
KY DIPVE SG+ VP FE L E + N++ Y+ PTPV
Sbjct: 67 KY-DIPVEVSGEDVPPPADGFEAAGLVEAVLRNVARCGYESPTPV 110
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 37.1 bits (82), Expect = 0.015
Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 3/114 (2%)
Frame = +2
Query: 407 PPAPRN---DRWKEPEPRAEERSNSRWPSDDVRRTRSRKDENDWTVPLPRDERQELLLFG 577
PP PR+ DR ++ R+ R+ R D R R R+ ++ + P
Sbjct: 64 PPPPRSGRGDRDRDRRDRSRSRTPPRRDHRDRDRDRDRRHDDHRSAPSHHHPLPAAAAIA 123
Query: 578 TGNTGINFSKYEDIPVEASGDRVPXCITSFEDVNLTELMRTNISLARYDKPTPV 739
+ ++ + GD VP ITSFE + I A + PTP+
Sbjct: 124 ADDPSTEAYRHRH-EITVVGDNVPAPITSFETGGFPPEILKEIQRAGFSSPTPI 176
>06_01_0169 - 1346281-1349188,1350069-1350184
Length = 1007
Score = 31.9 bits (69), Expect = 0.55
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 653 SXVRGLRWPQPVYPRIWRN*SRCCQCRTAIVPVVHRE 543
S +RG+R+ + P + R CCQ R+ IV + H E
Sbjct: 894 SELRGIRFEKDALPHMERMEIECCQLRSGIVGIKHLE 930
>11_04_0239 + 15235280-15235375,15236054-15236218
Length = 86
Score = 31.5 bits (68), Expect = 0.73
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = -2
Query: 347 DHSISRIHSNALVVRHSEIHCLDLDQRLPATAY---ADAGVCSDQYS*EPGAASPDQQAA 177
+H++ R+ V H E C++ + R+PA Y ADAGV D A PD
Sbjct: 22 EHALPRVLGRKDNVFHHECTCIE-NIRMPAVPYIEDADAGVLQDHVEDHDDALPPDLSGQ 80
Query: 176 ALD 168
+D
Sbjct: 81 IVD 83
>02_02_0539 - 11315788-11315841,11316620-11316700,11316728-11317711
Length = 372
Score = 31.5 bits (68), Expect = 0.73
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +2
Query: 413 APRNDRWKEPEPRAEERSNSRWPSDDVRRTRSRKDENDWTVPLPRDERQELLL 571
AP D W EP+P EE+ DD R R + + L R E ++LLL
Sbjct: 73 APAVDDWHEPDPIEEEQDED---DDDDAREERRARIRERALLLRRHEEEQLLL 122
>01_01_0066 -
513578-513730,513809-513920,514000-514163,514369-514521,
514598-514736,514823-514923,514995-515666,515953-516038,
516112-516777,516874-517128,517231-517358,518645-518799,
518880-519133,519186-519260,519324-519399,519511-519644,
519871-520153,520692-520850,520940-521038,521142-521310,
521423-521653,522002-522114,524179-524310,524389-524469,
525641-525763
Length = 1570
Score = 31.5 bits (68), Expect = 0.73
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 407 PPAPRNDRWKEPEPRAEERSNSRWPSDDVRRTRSRKDENDW 529
PPA RN++ + P A+ S R D V + R KD +D+
Sbjct: 362 PPASRNEKRDKAHPHADRESVDRPDLDHVIQRRRPKDRHDY 402
>03_06_0691 +
35576319-35576702,35576803-35576885,35576972-35577012,
35577974-35578018,35578217-35578371,35579116-35579265,
35579386-35579481,35579738-35579854,35579969-35580088,
35580170-35580262,35580351-35580467,35580815-35580931,
35581089-35581151,35581238-35581399
Length = 580
Score = 31.1 bits (67), Expect = 0.97
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 390 VRRIMNHRHHGMTAGKSRSQELKSVPIHAGLLTMCAELDLAKTRMIGQYRYLA 548
V+ N R G K+R KS+ L + LD+ TRM+GQY +LA
Sbjct: 376 VKNSYNRRAPGTVITKTRDLS-KSILTSIVLKSNITMLDIVSTRMLGQYGFLA 427
>07_02_0020 -
11897013-11897168,11897521-11897637,11898141-11898197,
11898278-11898370,11898452-11898571,11898774-11898890,
11899254-11899349,11899445-11899594,11899932-11900086,
11901047-11901257
Length = 423
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 390 VRRIMNHRHHGMTAGKSRSQELKSVPIHAGLLTMCAELDLAKTRMIGQYRYLA 548
V+ N R G K+R K+V L + LD+ TRM+GQY +LA
Sbjct: 262 VKNSYNRRAPGTLITKARDMS-KTVLTSIVLKSNITMLDIVSTRMLGQYGFLA 313
>01_06_0766 -
31820168-31820509,31821898-31822110,31822330-31822473,
31822759-31822797,31822834-31822932,31823024-31823113
Length = 308
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 674 HPQNW*CSXVRGLRWPQPVYPRIWRN*SR 588
HP + V G R P+P YPR+W+ R
Sbjct: 22 HPSKFSTLVVCGARGPRPRYPRVWKTRKR 50
>12_02_1211 -
27033927-27034029,27034130-27034273,27034358-27034439,
27034536-27034690,27034865-27034945,27035397-27035458,
27035966-27036034,27036807-27036867,27037560-27037816
Length = 337
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = +2
Query: 116 NVPLGSNMSNVTNQNGTGLEQQLAGLDLQPQAPKSTGRYIPPHLRRQLQATSDQGRDS 289
++P S+ S+ ++ T A L L+ P S+GR IPP LR ++S QG S
Sbjct: 23 SIPASSSSSSSSSSTTTAA----ASLPLRAAVPPSSGRRIPP-LRCASSSSSSQGSAS 75
>04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414
Length = 520
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +2
Query: 197 LQPQAPKSTGRYIPPHLRRQLQATSDQGRDSGSQNGEP 310
L PQAP+ R+ PPHL S SG P
Sbjct: 270 LWPQAPRQQARFSPPHLLNASPTPSPPNFPSGYLQSRP 307
>08_02_0526 +
18184146-18184168,18184247-18184438,18184846-18184954,
18185071-18185220,18185973-18186136,18186273-18186359,
18187083-18187137,18187911-18188333
Length = 400
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 407 PPAPRNDRWKEPEPRAEERSNSRWPSDDVR 496
PP R + P PR RS SR DD+R
Sbjct: 50 PPPRRRSTSRSPRPRRHGRSRSRSRDDDLR 79
>07_03_0487 -
18663890-18663964,18664286-18664441,18664693-18665295,
18665566-18665894,18665992-18666504,18667128-18667242,
18667326-18667397,18667480-18667644,18668604-18668752,
18668830-18668899,18668975-18669121,18669199-18669267,
18669366-18669416,18669537-18669629,18670122-18670211
Length = 898
Score = 28.7 bits (61), Expect = 5.2
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +2
Query: 98 EQSSQKNVPL-GSNMSNVTNQNGTGLEQQLAGLDLQPQAPKSTGRYIPPHLRRQLQATSD 274
E SSQKN+PL G + ++ + E G LQP+ T + PP +
Sbjct: 584 ENSSQKNIPLDGVSAQSIKPSASSRSEPVGLGGGLQPKRRSRTAK--PPGSSSDTGEVVN 641
Query: 275 QGRDSGSQN 301
R S SQN
Sbjct: 642 SSRISNSQN 650
>11_04_0254 -
15377689-15378357,15378807-15379241,15380326-15380370,
15380675-15381145
Length = 539
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -3
Query: 448 WLRLFPAVIPWCRWFIILLTSHVARPASVPFAFTIIPFLGFI 323
WL L P ++ + + LLT+ AR +P + +PF+G +
Sbjct: 8 WLLLSPLILLLLHYALALLTARRARKNPLPPSPPALPFIGHL 49
>06_03_0411 - 20520823-20521674
Length = 283
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +2
Query: 407 PPAPRNDRWKEPEPRAEERSNSRWPSDDVRRTRSRKDE 520
PP +E E EER R P +R R+R DE
Sbjct: 48 PPVASQREEEEEEEEEEEREVKRSPPGTLRHRRTRSDE 85
>06_03_0383 -
20154045-20154712,20154969-20155122,20155780-20155896,
20157395-20157466
Length = 336
Score = 28.3 bits (60), Expect = 6.8
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Frame = +2
Query: 146 VTNQNGTGLEQQLAGLDLQPQAPKSTGRYIPPHLR-----RQLQA-TSDQGRDSGSQNGE 307
V G+G+++ G D QP +P +P HL L+A T D R SG++
Sbjct: 180 VDGGGGSGVKKGEGGGDQQPWSPGVPDPVVPNHLETGSGAHHLEAITGDHHRSSGTKKRS 239
Query: 308 PPERWNE 328
P R E
Sbjct: 240 PELRDEE 246
>02_01_0624 -
4681834-4682298,4684250-4684398,4684479-4684557,
4684827-4684925,4685004-4685081,4685231-4685288,
4685814-4685913,4686000-4686008,4686105-4686138,
4686729-4686911,4687099-4687126,4687268-4687380,
4688253-4688459,4689212-4689511
Length = 633
Score = 28.3 bits (60), Expect = 6.8
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +3
Query: 264 QPLIKVETVDLRMANHQSVGMNPRNGMIVNANGTDAGLATCDVRRIMNHRH-HGMTAGKS 440
Q L E + + +V N + M ++ANGTD G A +HRH HG + S
Sbjct: 534 QTLQPDEELGMIQMTRSAVSQNGES-MSLHANGTDHGCAD-PQGNSKSHRHSHGSSQCCS 591
Query: 441 RSQELKSVPIHAGL 482
S+ P+ GL
Sbjct: 592 HSKRPDKTPLGLGL 605
>07_03_0814 +
21700274-21701923,21702282-21702434,21702563-21702634,
21702923-21703033
Length = 661
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 430 AVIPWCRWFIILLTSHVARPASVPFAFTIIPFL 332
A +P W LL A AS+P AF ++PFL
Sbjct: 72 AAVPAREWHA-LLRELAATDASLPLAFALLPFL 103
>02_04_0448 -
23001579-23001683,23001783-23002382,23002479-23002628,
23002788-23003015,23003188-23003302,23003392-23004659,
23006621-23006692
Length = 845
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 407 PPAPRNDRWKEPEPRAEERSNSRWPSDDVRRTRSRKDENDWTVPLPR 547
PP P + W +P R S W S+ + S ++ W VPL R
Sbjct: 323 PPIPSLNDWSQPPARGSTFYPSIWQSEADPKANS---DSRWRVPLCR 366
>01_01_0682 -
5244805-5244919,5246468-5246613,5246813-5246994,
5247069-5247295,5247382-5247467,5247564-5247656,
5247964-5248118,5248407-5248490,5248589-5248768,
5249587-5249828,5249927-5249982
Length = 521
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 599 FSKYEDIPVEASGDRVPXCITSFEDVNLTELMRTNISLARYDKPTPV 739
+ + +I VE G VP + F DV E + I+ A + +PTP+
Sbjct: 73 YRRRREITVE--GRDVPKPVREFRDVGFPEYVLQEITKAGFVEPTPI 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,550,641
Number of Sequences: 37544
Number of extensions: 477336
Number of successful extensions: 1543
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1543
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -