Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_B17
(708 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49859| Best HMM Match : No HMM Matches (HMM E-Value=.) 157 1e-38
SB_34186| Best HMM Match : Cyt-b5 (HMM E-Value=2.6e-13) 87 1e-17
SB_8772| Best HMM Match : No HMM Matches (HMM E-Value=.) 81 1e-15
SB_42543| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 3e-11
SB_10760| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 7e-09
SB_50928| Best HMM Match : 7tm_2 (HMM E-Value=4.7e-07) 33 0.30
SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_11606| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_32823| Best HMM Match : Late_protein_L1 (HMM E-Value=2.5) 28 8.5
SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_10156| Best HMM Match : DSL (HMM E-Value=3.3e-35) 28 8.5
>SB_49859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 186
Score = 157 bits (380), Expect = 1e-38
Identities = 79/162 (48%), Positives = 109/162 (67%), Gaps = 1/162 (0%)
Frame = +3
Query: 93 LTSPLNLVLIGVIVYLIYKIIKSNFESEANVXXXXXXXXKLRKDLTVAELKKYDGTQPDG 272
L+SP+ +VL+ V+V++I +I+K+ F+ ++D T+ ELK+YDG +
Sbjct: 17 LSSPIQIVLLIVLVFVIRRILKAKFDKVPEEPPPKRLEPFKKRDFTLDELKEYDGLKSP- 75
Query: 273 RVLLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQVAASE-NDEYDDVSDLGS 449
VL+AVNG +FDVTRGK FYGPGGPYS FAG DA+RGLAT + DEYDD+SDL
Sbjct: 76 YVLMAVNGKVFDVTRGKDFYGPGGPYSNFAGHDASRGLATFSLGPEAIKDEYDDLSDLNG 135
Query: 450 DEIASAKEWEEQFREKYDIVGRLLKLGETPKNYSDDESEDKK 575
+ S +EWE+QF EKYD+VGRLLK GE + Y +E +++
Sbjct: 136 MQQDSLREWEQQFDEKYDLVGRLLKPGEKHQQYETEEETEEE 177
>SB_34186| Best HMM Match : Cyt-b5 (HMM E-Value=2.6e-13)
Length = 310
Score = 87.0 bits (206), Expect = 1e-17
Identities = 40/130 (30%), Positives = 73/130 (56%)
Frame = +3
Query: 132 VYLIYKIIKSNFESEANVXXXXXXXXKLRKDLTVAELKKYDGTQPDGRVLLAVNGIIFDV 311
V ++ ++ F ++A + L+ +L K+DG+QPD + +A+ G ++DV
Sbjct: 57 VLILVSVVYVYFNADAPIIKARSSKRTEGVLLSTEDLAKHDGSQPDANIYIAILGKVYDV 116
Query: 312 TRGKRFYGPGGPYSAFAGKDATRGLATGQVAASENDEYDDVSDLGSDEIASAKEWEEQFR 491
+G+RFYGPG Y FAG+D+T TG ++ DD S+L ++++ K W E ++
Sbjct: 117 EKGRRFYGPGTGYHVFAGRDSTPSFVTGMFDRAK--ATDDCSNLKNEDLLGIKGWMEFYQ 174
Query: 492 EKYDIVGRLL 521
+ Y VG+++
Sbjct: 175 KDYKYVGKVV 184
>SB_8772| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 232
Score = 80.6 bits (190), Expect = 1e-15
Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 4/106 (3%)
Frame = +3
Query: 219 KDLTVAELKKYDGTQPDGRVLLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQ 398
++ TV ELK YDG + + +AVNG +FDVT ++GP GP AGKDA+R L T
Sbjct: 72 REFTVRELKGYDGVNKE-LIYVAVNGKVFDVTSAWNYFGPAGPDCLLAGKDASRALVTFS 130
Query: 399 V----AASENDEYDDVSDLGSDEIASAKEWEEQFREKYDIVGRLLK 524
V + D DD++DL + E+E Q+ E+Y VGRL++
Sbjct: 131 VDNFYQTEQRDSMDDLNDLNPLQRDCLFEYETQYMERYPCVGRLVE 176
>SB_42543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 66.1 bits (154), Expect = 3e-11
Identities = 27/61 (44%), Positives = 41/61 (67%)
Frame = +3
Query: 225 LTVAELKKYDGTQPDGRVLLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQVA 404
L+ +L K+DG QPD + +A+ G ++DV +G+RFYGPG Y FAG+D+T T V+
Sbjct: 272 LSTVDLVKHDGLQPDANIYIAILGKVYDVEKGRRFYGPGTGYHVFAGRDSTPSFVTVLVS 331
Query: 405 A 407
+
Sbjct: 332 S 332
>SB_10760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 58.0 bits (134), Expect = 7e-09
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Frame = +3
Query: 219 KDLTVAELKKYDGTQPDGRVLLAVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQ 398
K T EL ++G + + +AV G++FDV+ K YG G Y++ AGK+ +R +A
Sbjct: 46 KLFTKDELATFNGRNSNSPIYVAVKGVVFDVSTSKDLYGYGESYNSMAGKECSRAIAKWS 105
Query: 399 VAASENDEYDDVSDLGSDEIAS-AKEWEEQFREKYDIVG 512
+AA + ++ L DE+ K + + + KY +VG
Sbjct: 106 LAAENMN--GNLDGLTKDELQRLEKNFHDVYMRKYPVVG 142
>SB_50928| Best HMM Match : 7tm_2 (HMM E-Value=4.7e-07)
Length = 1127
Score = 32.7 bits (71), Expect = 0.30
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = +3
Query: 345 PYSAFAGKDATRGLATGQVAASENDEYDDVSDLGSDEIASAKEWE---EQFREKYDIVGR 515
PY+ + G+D TR + Q+A + N +DDV+ L + +I W +FR + +V R
Sbjct: 421 PYAEYKGEDETRIVPFKQLAETANIMFDDVAKLPA-KIYFIVLWSIEARRFRVMFTLVAR 479
Query: 516 LLKLGE 533
LK E
Sbjct: 480 GLKTQE 485
>SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6116
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +3
Query: 285 AVNGIIFDVTRGKRFYGPGGPYSAFAGKDATRGLATGQVAASEND 419
AV+ II DV + GG Y+A +DA G V A +ND
Sbjct: 3633 AVSVIITDVNEHTPQFTSGGSYTAVIAEDAPVGSFVTNVTAIDND 3677
>SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1200
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 1 RPADEYRPRARARNTYTKWRTKL 69
RP D+Y P+ R+ T + W KL
Sbjct: 224 RPTDDYNPKTRSTKTSSTWPPKL 246
>SB_11606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 816
Score = 28.3 bits (60), Expect = 6.5
Identities = 23/88 (26%), Positives = 38/88 (43%)
Frame = +3
Query: 315 RGKRFYGPGGPYSAFAGKDATRGLATGQVAASENDEYDDVSDLGSDEIASAKEWEEQFRE 494
RG G GG + +G D T G +V E+D D+ + +E + ++ +
Sbjct: 38 RGGGGGGGGGGDAGCSGSD-TDGEEAVKVVVVESDTSDEEEEGEKEESMESYNELDEPQA 96
Query: 495 KYDIVGRLLKLGETPKNYSDDESEDKKS 578
YD+V + KN DD+ +D S
Sbjct: 97 TYDVVD-TYNVMHVKKNSPDDDDDDDDS 123
>SB_32823| Best HMM Match : Late_protein_L1 (HMM E-Value=2.5)
Length = 585
Score = 27.9 bits (59), Expect = 8.5
Identities = 22/88 (25%), Positives = 38/88 (43%)
Frame = +3
Query: 156 KSNFESEANVXXXXXXXXKLRKDLTVAELKKYDGTQPDGRVLLAVNGIIFDVTRGKRFYG 335
+SN ++ NV ++R D A G + DGR + + +D +R + +G
Sbjct: 285 QSNDRAQGNVTVVSTAHVQVRADDVQA--MNVSGVKSDGRPSSSGQDV-YDGSR-QSTHG 340
Query: 336 PGGPYSAFAGKDATRGLATGQVAASEND 419
P P+ A A +GQ + SE +
Sbjct: 341 PALPWEELAQTQAPHSRRSGQSSGSETE 368
>SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1045
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +3
Query: 363 GKDATRGLATGQVAASENDEYDDVSDLGSDEIASAKEWEEQFREKYDIVGRLLKLGETPK 542
GK A G+ A +++DE DD E+ +K +E +K D K+
Sbjct: 255 GKKAESKRPIGKAALAKDDEDDDTLYANYTEVDESKPADENKNDKTDGAKTAKKINIKEN 314
Query: 543 NYSDDES 563
S++ES
Sbjct: 315 PLSEEES 321
>SB_10156| Best HMM Match : DSL (HMM E-Value=3.3e-35)
Length = 681
Score = 27.9 bits (59), Expect = 8.5
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = -3
Query: 532 SPNLRRRPTMSYFSLNCSSHSLAEAISSEPRSLTSSYSSFSDAATCPVAKPLVA-SLPAN 356
SP+ R +S S +C S S + S E + TSSY ++ A+ V L A S+ +
Sbjct: 423 SPSRWRLTQLS--SQSCESCSTRTSKSQESNTETSSYLQYTQPASFYVTSKLTAVSITSQ 480
Query: 355 AEY 347
+EY
Sbjct: 481 SEY 483
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,618,178
Number of Sequences: 59808
Number of extensions: 373616
Number of successful extensions: 1162
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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