Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_B16
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003141-3|AAK21484.1|  135|Caenorhabditis elegans Lipid binding...    73   2e-13
Z81127-2|CAB03387.1|  137|Caenorhabditis elegans Hypothetical pr...    71   8e-13
AF003141-5|AAK21486.1|  136|Caenorhabditis elegans Lipid binding...    68   7e-12
AC024771-9|ABA61863.1|  137|Caenorhabditis elegans Lipid binding...    65   4e-11
AC024771-8|AAK70656.1|  152|Caenorhabditis elegans Lipid binding...    65   4e-11
Z81127-7|CAB03391.2|  137|Caenorhabditis elegans Hypothetical pr...    58   8e-09
AC024859-13|AAK29965.2|  338|Caenorhabditis elegans Hypothetical...    29   3.0  
U41993-3|AAA83445.1|  384|Caenorhabditis elegans Nuclear hormone...    28   6.9  

>AF003141-3|AAK21484.1|  135|Caenorhabditis elegans Lipid binding
           protein protein 6 protein.
          Length = 135

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 36/78 (46%), Positives = 48/78 (61%)
 Frame = +1

Query: 226 FARNSGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGA 405
           + +  GVGLITRKAA  + PT+E++ +GD +     STFK T + FK G+EF+E   DG 
Sbjct: 20  YMKEVGVGLITRKAAANLKPTLEIKVEGDLWYSNQYSTFKNTTLSFKLGQEFDETTPDGR 79

Query: 406 KVKSVCTFEGNTLKQVQK 459
            VKSV  FE      +QK
Sbjct: 80  TVKSVVNFENGKFIHIQK 97


>Z81127-2|CAB03387.1|  137|Caenorhabditis elegans Hypothetical
           protein T22G5.2 protein.
          Length = 137

 Score = 70.9 bits (166), Expect = 8e-13
 Identities = 43/114 (37%), Positives = 59/114 (51%), Gaps = 2/114 (1%)
 Frame = +1

Query: 226 FARNSGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGA 405
           + +  GVGLITRKAA  + P +E+R DG+ +N    STFK T++ FK GEEF E+  D  
Sbjct: 22  YMKEIGVGLITRKAAAHLKPILEIRLDGETWNFDQFSTFKNTKLSFKLGEEFVENSPDDR 81

Query: 406 KVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAVMT--AKDVTCTRVYK 561
              S+ TFE   L   Q        + V     E  K + T  + DV C R ++
Sbjct: 82  TYNSLFTFENGKLTHRQNKIKENHKSSVLTTWLENGKLIQTYQSGDVICRREWE 135


>AF003141-5|AAK21486.1|  136|Caenorhabditis elegans Lipid binding
           protein protein 5 protein.
          Length = 136

 Score = 67.7 bits (158), Expect = 7e-12
 Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 2/113 (1%)
 Frame = +1

Query: 226 FARNSGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGA 405
           + +  GVGL+ RKAA A  PT+E++ +G+++++   STFK T ++F  G EF+E   DG 
Sbjct: 21  YLKEVGVGLLLRKAACAAKPTLEIKVNGNKWHVNQLSTFKNTTLEFTLGVEFDETTPDGR 80

Query: 406 KVKSVCTFEGNTLKQVQK--APDGLEVTYVREFGPEEMKAVMTAKDVTCTRVY 558
           + KS  T E   +  VQK       +    R F  E++   + +  V   R Y
Sbjct: 81  QFKSTITIEDGKVVHVQKRIKDSDHDSVITRWFEGEKLITTLQSGSVISRRAY 133


>AC024771-9|ABA61863.1|  137|Caenorhabditis elegans Lipid binding
           protein protein 9,isoform b protein.
          Length = 137

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
 Frame = +1

Query: 226 FARNSGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGA 405
           + +  GVG   R  A    P +E   +GDE+ + ++STFK   +K+K G   +E  ADG 
Sbjct: 22  YLKEVGVGWAIRTIATKTKPALEFAVNGDEWTMNSNSTFKNYTLKWKLGTASDEKTADGR 81

Query: 406 KVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPE-EMKAVMTAKDVTCTRVYK 561
            V SV + E + L Q++    G + + +  +    ++  V T   V CTRVY+
Sbjct: 82  DVSSVFSIENDHLVQIETGKGGGKDSRIERYIENGKLVIVCTCNGVKCTRVYE 134


>AC024771-8|AAK70656.1|  152|Caenorhabditis elegans Lipid binding
           protein protein 9,isoform a protein.
          Length = 152

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
 Frame = +1

Query: 226 FARNSGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGA 405
           + +  GVG   R  A    P +E   +GDE+ + ++STFK   +K+K G   +E  ADG 
Sbjct: 37  YLKEVGVGWAIRTIATKTKPALEFAVNGDEWTMNSNSTFKNYTLKWKLGTASDEKTADGR 96

Query: 406 KVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPE-EMKAVMTAKDVTCTRVYK 561
            V SV + E + L Q++    G + + +  +    ++  V T   V CTRVY+
Sbjct: 97  DVSSVFSIENDHLVQIETGKGGGKDSRIERYIENGKLVIVCTCNGVKCTRVYE 149


>Z81127-7|CAB03391.2|  137|Caenorhabditis elegans Hypothetical
           protein T22G5.6 protein.
          Length = 137

 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 27/69 (39%), Positives = 42/69 (60%)
 Frame = +1

Query: 226 FARNSGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGA 405
           + +  GVGL+ RKAA+  +PT+E++ DGD ++    STFK  ++ FK  E+F E   D  
Sbjct: 22  YLKEIGVGLLIRKAASLTSPTLEIKLDGDTWHFNQYSTFKNNKLAFKIREKFVEIAPDER 81

Query: 406 KVKSVCTFE 432
              ++ TFE
Sbjct: 82  SYNTLVTFE 90


>AC024859-13|AAK29965.2|  338|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.17 protein.
          Length = 338

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 259 RKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEE 387
           + A +  TP        D+  + T++T  TTE K KP E+ EE
Sbjct: 296 KPAESTETPAAGTEPSTDDGAIETTTTTTTTENKEKPEEKMEE 338


>U41993-3|AAA83445.1|  384|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 39 protein.
          Length = 384

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 24/92 (26%), Positives = 42/92 (45%)
 Frame = +1

Query: 202 EKLSGLFRFARNSGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEF 381
           EK+  LF  + N    +IT+ ++  V+  +EL+   +EY L+    F    +  K  ++ 
Sbjct: 218 EKIHQLFVKSPN----IITQISSLVVSKFIELKVTNEEYVLLVMLFFCNPAISHKLSDKA 273

Query: 382 EEDRADGAKVKSVCTFEGNTLKQVQKAPDGLE 477
           +E  A   K+     F    +K  + AP  LE
Sbjct: 274 KESLAKYQKMYCSALFNYCQIKYKKAAPARLE 305


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,631,403
Number of Sequences: 27780
Number of extensions: 230539
Number of successful extensions: 632
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)