Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_B13
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    29   0.37 
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual      29   0.48 
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    29   0.64 

>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -2

Query: 468 RCSLLYVRNHQARRGSSYHVRHHHRGSRAGSCGHR 364
           R + +Y +  Q ++ SS+H  HHH+ S++ S  H+
Sbjct: 538 RTTKIY-KAQQHKQKSSHHKHHHHKKSKSSSSKHK 571


>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -2

Query: 381 GSCGHRCGGQPRSKHSRIWGEHRCRGHGRSQEKPRGRWGQRG 256
           GS  H    +   K + + G  R RG GR + + RGR G RG
Sbjct: 117 GSMLHERPLKVTPKRTNVPGMSRGRGRGRGRGRGRGRGGYRG 158


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +3

Query: 309 DTYAHPKYDYAYSVADPHTGDHKSQHESRDGGAVHGSYSLVEPDGSVRKVDYTADDH 479
           DT     YDY+ S +  H G H ++H    GG+     +  +  G+V    Y+ + +
Sbjct: 193 DTVGGGAYDYSSSGSHTHGGSHGTEHR---GGSYGNDNTANKTRGAVSSAGYSGEGY 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,118,144
Number of Sequences: 5004
Number of extensions: 42596
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)