Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_B13
(574 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25549| Best HMM Match : WD40 (HMM E-Value=0.25) 32 0.38
SB_49989| Best HMM Match : GRP (HMM E-Value=2.3) 32 0.38
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 32 0.38
SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0) 31 0.88
SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9) 31 0.88
SB_36147| Best HMM Match : Keratin_B2 (HMM E-Value=1.7) 30 1.2
SB_16492| Best HMM Match : No HMM Matches (HMM E-Value=.) 24 1.6
SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062) 29 3.6
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 29 3.6
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_8451| Best HMM Match : GRP (HMM E-Value=9.6) 28 6.2
SB_53926| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098) 27 8.2
SB_39486| Best HMM Match : PsiF_repeat (HMM E-Value=5.9) 27 8.2
SB_4451| Best HMM Match : Cornifin (HMM E-Value=0.11) 27 8.2
SB_2877| Best HMM Match : Hom_end (HMM E-Value=1.1) 27 8.2
SB_30| Best HMM Match : DNA_pol_delta_4 (HMM E-Value=2.2) 27 8.2
>SB_25549| Best HMM Match : WD40 (HMM E-Value=0.25)
Length = 506
Score = 31.9 bits (69), Expect = 0.38
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 456 LYVRNHQARRGSSYHVRHHHRGSRAGSCGHRCGGQPRSKHS 334
+Y+ N A +G YH HH + HR GG+ R+ S
Sbjct: 355 IYIINRYAMQGKGYHHLHHQQADHGELELHRGGGRSRTSGS 395
>SB_49989| Best HMM Match : GRP (HMM E-Value=2.3)
Length = 181
Score = 31.9 bits (69), Expect = 0.38
Identities = 21/64 (32%), Positives = 29/64 (45%)
Frame = -2
Query: 438 QARRGSSYHVRHHHRGSRAGSCGHRCGGQPRSKHSRIWGEHRCRGHGRSQEKPRGRWGQR 259
Q RGS + HHRGS HR GQ + + RG G++++ RG Q
Sbjct: 122 QHHRGSG-QAKQHHRGSGQAKQHHRESGQAKQHY---------RGSGQAKQHHRGSGQQT 171
Query: 258 GLXG 247
G+ G
Sbjct: 172 GITG 175
Score = 31.5 bits (68), Expect = 0.51
Identities = 20/56 (35%), Positives = 25/56 (44%)
Frame = -2
Query: 438 QARRGSSYHVRHHHRGSRAGSCGHRCGGQPRSKHSRIWGEHRCRGHGRSQEKPRGR 271
Q RGS + HHRGS HR GQ + +H R G+ + G Q K R
Sbjct: 92 QHHRGSG-QAKQHHRGSGQAKQHHRGSGQAK-QHHRGSGQAKQHHRGSGQAKQHHR 145
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -2
Query: 420 SYHVRHHHRGSRAGSCGHRCGGQPRSKH-SRIWGEHRCRGHGRSQEKPRG 274
S + HHRGS HR GQ + H + RG G++++ RG
Sbjct: 67 SGQAKQHHRGSGQAKQHHRGSGQAKQHHRGSGQAKQHHRGSGQAKQHHRG 116
>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4002
Score = 31.9 bits (69), Expect = 0.38
Identities = 20/70 (28%), Positives = 28/70 (40%)
Frame = -2
Query: 444 NHQARRGSSYHVRHHHRGSRAGSCGHRCGGQPRSKHSRIWGEHRCRGHGRSQEKPRGRWG 265
+++ R G H + G R G C GG R+ I R + R + + G W
Sbjct: 3245 HNECRSGPKAHNSYSAWG-RKGGCSRWTGGSWRNDVYVILKRENARLNRRRRGRKTGAWS 3303
Query: 264 QRGLXGAAWI 235
RGL WI
Sbjct: 3304 SRGLNRNQWI 3313
>SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 919
Score = 30.7 bits (66), Expect = 0.88
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Frame = -2
Query: 483 HDGHQRCSLLYVRNHQARRGSSYHVRHHHRGSR-AGSCGH---RCGGQPRSKHS 334
H GH + HQ + +H HHHR + S GH G+ S HS
Sbjct: 416 HHGHGGLEAIQTSKHQQDQHHHHHHHHHHRHHKHRSSSGHSTTEASGRRASDHS 469
>SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9)
Length = 1058
Score = 30.7 bits (66), Expect = 0.88
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -2
Query: 435 ARRGSSYHVRHHHRGSRAGSCGHRCGGQPRSKHSRIWGEHRCRGHGR 295
A G+S+HV H S H Q ++H R+W H HGR
Sbjct: 360 ASHGTSWHVMARHGTSWQVMASHGTSWQVMARHGRLW--HVMARHGR 404
>SB_36147| Best HMM Match : Keratin_B2 (HMM E-Value=1.7)
Length = 533
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = +1
Query: 13 CSVTCSVS--LVAKCSPKCSSLAPCWLAANAGLLPYHHAAAVSSQSHRPS*CPGTLCLGS 186
CS C L++ CSP + + +A + +PYH ++ S H P C L S
Sbjct: 181 CSCRCFPYQVLMSMCSPSRAHVDVFPIACSCRCVPYHVLMSMCSPMHAPCRCVSHHVLMS 240
Query: 187 LRPCSLCRTH 216
+ CS R H
Sbjct: 241 I--CSPSRAH 248
>SB_16492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 24.2 bits (50), Expect(2) = 1.6
Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Frame = +3
Query: 6 RPMLSHLFCFSRCKMFTKVFVLSAVLACRQRWSPAIPPRC-------GSFVPVASSVMMP 164
RP + C +V VL + W P I P C G V S ++ P
Sbjct: 69 RPPYPYQLCGRTLDPVAQVTVLGVTITNDLSWGPHIEPMCAKANRVLGLVKRVCSDILDP 128
Query: 165 RHTMPRLITPLLIMPH 212
T +L+ L+ PH
Sbjct: 129 --TTRQLLYCTLVRPH 142
Score = 24.2 bits (50), Expect(2) = 1.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 312 TYAHPKYDYAYSVADPHTGDHKSQHES 392
T P +YA + P TG HK+ E+
Sbjct: 137 TLVRPHLEYASCIWSPSTGKHKALIEN 163
>SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062)
Length = 406
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/62 (27%), Positives = 23/62 (37%)
Frame = +3
Query: 207 PHPLSMQLH*STPPLXVHAAPIVHAASLGYAHGHDTYAHPKYDYAYSVADPHTGDHKSQH 386
PHP +P + P++ S+ H TY HP Y PHT + H
Sbjct: 135 PHPTYKHPSYPSPHIQASLLPLIPHTSIPPTP-HPTYKHPSYPTYNIPPTPHTSIPPTPH 193
Query: 387 ES 392
S
Sbjct: 194 TS 195
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 28.7 bits (61), Expect = 3.6
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = -2
Query: 450 VRNHQARRGSSYHVRHHHRG-SRAGSCGHRCGGQPRSKHSRIWGEHRCRGHGRSQEKPRG 274
+R ++R S R RG SR G R S SR R RG GR + + R
Sbjct: 635 LRRSRSRTSLSSRSRSRDRGGSRRGKRRSRSRSSSYSSRSRSRSRSRDRGRGRKRSRRRS 694
Query: 273 R 271
R
Sbjct: 695 R 695
>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 2735
Score = 28.7 bits (61), Expect = 3.6
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +3
Query: 243 PPLXVHAAP-IVHAASLGYAHGHDTY-AHPKYDYAYSVADPHTGDHKSQHESRDGGAVHG 416
PP+ VH P +VH + H HDTY +HP ++ +S H G + GG +G
Sbjct: 1407 PPVVVHQPPPLVHQPII---HSHDTYVSHPFFE-PFSSHVIHAGTYVGAPHFFGGGWGYG 1462
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Frame = +3
Query: 201 IMPHPLSMQLH*STPPLXVHAAPIVH-----AASLGYAHGHDTYAHPKYDYAYSVADPHT 365
++ H S+ +H PP+ H P+V H HDTY Y Y+ H
Sbjct: 571 VVYHQPSVVVH--RPPIVYHQPPVVFHQPPPMVRQPVMHSHDTYVAHAYHEPYASTISHA 628
Query: 366 GDHKSQHESRDGGAVHGSY 422
+ GG +G +
Sbjct: 629 ATYVGAPHYYPGGFGYGPW 647
>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1913
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +3
Query: 333 DYAYSVADPHTGDHKSQHESRDGGAVHG 416
D+AY DPHT HK H R G + G
Sbjct: 1425 DFAYVARDPHTSKHKC-HMFRCHGNISG 1451
>SB_8451| Best HMM Match : GRP (HMM E-Value=9.6)
Length = 158
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Frame = -2
Query: 423 SSYHVRHH-----HRGSRAGSCGH-RCGGQPRSKHSRIWG-EHRCRGH 301
SS+H HH HRG GH R GG ++ RI G H GH
Sbjct: 110 SSHHHHHHHHHHQHRGCHKAVAGHVRLGGGHHTETLRIGGHNHAHTGH 157
>SB_53926| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/47 (23%), Positives = 20/47 (42%)
Frame = -2
Query: 408 RHHHRGSRAGSCGHRCGGQPRSKHSRIWGEHRCRGHGRSQEKPRGRW 268
R + SR H P ++++ + EH G + + P+G W
Sbjct: 17 RQNKSNSRQNKASHGKESNPTAEYNELTAEHNEHGRTQLRPGPQGSW 63
>SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098)
Length = 1177
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = -1
Query: 211 CGIMSRGVMSRGIVCRGIMTDDAT--GTKLPQRGGM--AGDQRWRQANTALRTNTLVN 50
C + V ++GI C G + DAT G +P++ G GDQ Q+ + L+ N +++
Sbjct: 663 CAKVDSWVCNQGINCEGRVEADATTSGLDMPRKTGYQPRGDQ--HQSESVLKANRVMD 718
>SB_39486| Best HMM Match : PsiF_repeat (HMM E-Value=5.9)
Length = 91
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 408 RHHHRGSRAGSCGHRCGGQPRSKHSRIWGEH 316
RHHHR S + G +PR K S G++
Sbjct: 42 RHHHRSSSVPAHGRPQSTEPRLKQSTATGQN 72
>SB_4451| Best HMM Match : Cornifin (HMM E-Value=0.11)
Length = 1384
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -2
Query: 408 RHHHRGSRAGSCGHRCGGQPRSKHSRIWGEHRCRGHGRSQEKP 280
RHH CG+R S HS+ + +R R HG S KP
Sbjct: 638 RHHGGSDSKPYCGNRFRHHGGS-HSKPYCGNRFRHHGGSHSKP 679
>SB_2877| Best HMM Match : Hom_end (HMM E-Value=1.1)
Length = 1250
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 154 TDDATGTKLPQRGGMAGDQRWRQANTALRTNTL 56
TDD T GG DQ R ++ALR+ T+
Sbjct: 1104 TDDVTPPAKAAAGGRTADQGSRSGDSALRSRTM 1136
>SB_30| Best HMM Match : DNA_pol_delta_4 (HMM E-Value=2.2)
Length = 269
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 408 RHHHRGSRAGSCGHRCGGQPRSKHSRIWGEH 316
RHHHR S + G +PR K S G++
Sbjct: 42 RHHHRSSSVPAHGRPQSTEPRLKQSTATGQN 72
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,956,929
Number of Sequences: 59808
Number of extensions: 426312
Number of successful extensions: 1698
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1665
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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