Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_B12
(725 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 167 1e-42
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 161 9e-41
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc... 64 3e-11
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc... 35 0.010
SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyc... 33 0.055
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 31 0.13
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 28 1.2
SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3 |Schizosac... 27 2.7
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 27 3.6
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 26 4.8
SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces... 26 4.8
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 26 4.8
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 26 4.8
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 26 4.8
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 26 6.3
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 25 8.3
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 25 8.3
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 167 bits (406), Expect = 1e-42
Identities = 86/210 (40%), Positives = 131/210 (62%), Gaps = 2/210 (0%)
Frame = +3
Query: 102 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRV--NVIHARQQVRSPVTNIARTSFFHI 275
M +FV N KG+V+ISR YR DI + V+ F + + Q +P ++ +I
Sbjct: 1 MASAIFVLNLKGKVIISRDYRADIPMSVVEKFLPLKSEVEEEQGFSTPCLTHEGINYIYI 60
Query: 276 KRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDF 455
+++L A++K N +A + FL K+ DV YF ++ EE+I++NFVL+YELLDEI+DF
Sbjct: 61 HHNDVYLLALSKMNSDAMEMLVFLRKMADVFIDYFKELQEESIRDNFVLVYELLDEIMDF 120
Query: 456 GYPQNSDTGVLKTFITQQGIKSASKEEQAQITSQVTGQIGWRREGIKYRRNELFLDVLXY 635
G+PQ ++T +L+ +ITQ S + ++ A +T I WR EGI YR+NE+FLDV+
Sbjct: 121 GFPQTTETKILQEYITQ---TSNTVKKHAPPPIAMTNAISWRSEGIHYRKNEVFLDVIES 177
Query: 636 VNLLMSPQGQVLSAHVAGKVVMXSYLSGMP 725
VNL+ + G V+ + + GKV + YLSGMP
Sbjct: 178 VNLIAAADGTVIQSEILGKVRLKCYLSGMP 207
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 161 bits (391), Expect = 9e-41
Identities = 77/218 (35%), Positives = 133/218 (61%), Gaps = 10/218 (4%)
Frame = +3
Query: 102 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKR 281
MI GLF++N KG+ LI + +R D+ ++ + FRV ++ R P+ +I +++ + K
Sbjct: 1 MISGLFIFNLKGDTLICKTFRHDLKKSVTEIFRVAIL-TNTDYRHPIVSIGSSTYIYTKH 59
Query: 282 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGY 461
++++ A+TK N N +V EFL +I + YFGK++E +K+N I+ELLDE++D+G
Sbjct: 60 EDLYVVAITKGNPNVMIVLEFLESLIQDLTHYFGKLNENTVKDNVSFIFELLDEMIDYGI 119
Query: 462 PQNSDTGVLKTFITQQGIK------SASKEEQAQI----TSQVTGQIGWRREGIKYRRNE 611
Q ++ L ++ +K S + +Q+ +S++ G + WRR GIKYR+N
Sbjct: 120 IQTTEPDALARSVSITAVKKKGNALSLKRSHSSQLAHTTSSEIPGSVPWRRAGIKYRKNS 179
Query: 612 LFLDVLXYVNLLMSPQGQVLSAHVAGKVVMXSYLSGMP 725
+++D++ +NLL+S G VL + V+G V M + LSGMP
Sbjct: 180 IYIDIVERMNLLISSTGNVLRSDVSGVVKMRAMLSGMP 217
>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 425
Score = 63.7 bits (148), Expect = 3e-11
Identities = 35/150 (23%), Positives = 68/150 (45%), Gaps = 3/150 (2%)
Frame = +3
Query: 285 NIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYP 464
++ L T + + + + +I+DV++++FG + ++ N +I +LL E++D+GY
Sbjct: 66 DVRLCIPTTCDTEPLYIHDIMRRIVDVVKTFFGGFNASKVEKNVCVIVQLLAEMIDYGYA 125
Query: 465 QNSDTGVLKTFITQQGIKS---ASKEEQAQITSQVTGQIGWRREGIKYRRNELFLDVLXY 635
+ L+ + + A Q + + WR KY NE F+ VL
Sbjct: 126 TCMEPNALQDIVPLPSFMNKFMAVTGLQTNTPTLARDTVPWRTAKAKYATNEFFIHVLER 185
Query: 636 VNLLMSPQGQVLSAHVAGKVVMXSYLSGMP 725
V+ + P G++ V + +SGMP
Sbjct: 186 VSAVYQPNGKLAFGTVKSDMECKCQISGMP 215
>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 35.1 bits (77), Expect = 0.010
Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Frame = +3
Query: 102 MIGGLFVYNHKGEVLISRVYR--DDIGRNAVDAFRVNVIHAR-QQVRSPVTNIARTSFFH 272
MI + + N G+ +S+ Y DD + + A +I R Q+ ++ + +
Sbjct: 1 MIQFILIQNRHGKNRLSKYYVPFDDDEKVRLKARIHQLISQRNQKFQANFLEWENSKLVY 60
Query: 273 IKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEIL 449
+ A ++ N + E + ++++ S+FG + E ++ NF + +LDEI+
Sbjct: 61 RRYAGLYFCFCVDSTDNDLAILEMIHFFVEILDSFFGNVCELDLIFNFYKVSAILDEII 119
>SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 240
Score = 32.7 bits (71), Expect = 0.055
Identities = 28/140 (20%), Positives = 57/140 (40%), Gaps = 2/140 (1%)
Frame = +3
Query: 120 VYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTS--FFHIKRANIW 293
+ N G+ +ISR +R+ + R V++ ++ A +S T + + F + ++
Sbjct: 8 IVNRGGKAIISRQFRE-MSRVRVESL-LSSFPALVSEKSQNTTVESDNVRFVYQPLDELY 65
Query: 294 LAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQNS 473
+ +T N + L + V+ S + E I I+ DE GY N
Sbjct: 66 IVLITNLQSNILQDIDTLHLLSQVVTSICSSLEEREILEYAFEIFTAFDEATSLGYRDNV 125
Query: 474 DTGVLKTFITQQGIKSASKE 533
+KT++ + + +E
Sbjct: 126 SLTQIKTYLEMESHEEKIQE 145
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 31.5 bits (68), Expect = 0.13
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = -3
Query: 471 NSEGNQSPRSHQATHRSEQSYS*CSLQKSCQNTIASHQ*SSTGTQIPWPRSHFAL 307
+S + RS AT +S++S S + S T S+ ++ TQ+ WP +H L
Sbjct: 719 DSGSRRVTRSQNATSQSQESGS--EIGSSIAGTAGSYNVGTSNTQLSWPSTHSTL 771
>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/46 (26%), Positives = 29/46 (63%)
Frame = +3
Query: 270 HIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIK 407
+I+ N + + +++ + A++ E +++DV QS+ G + EEN++
Sbjct: 414 NIEITNPIIVSPVERSRSQALLNEIQTRVLDVRQSHGGVVLEENVR 459
>SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 165
Score = 27.1 bits (57), Expect = 2.7
Identities = 21/127 (16%), Positives = 55/127 (43%), Gaps = 8/127 (6%)
Frame = +3
Query: 102 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPV------TNI--AR 257
MI +F++N+KG+ +++ Y ++ + I+A R P +N+ +
Sbjct: 1 MIYAVFIFNNKGKPRLTKFYTPI--DESIQQKLIGDIYAAVSTRPPTACNFLESNLIAGK 58
Query: 258 TSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELL 437
+ + A ++ V + + + + + ++ + F + E ++ F I+ +L
Sbjct: 59 NRIIYRQYATLYFVFVVDEGESELGILDLIQVFVEALDRCFNNVCELDLVFKFQEIHAIL 118
Query: 438 DEILDFG 458
E++ G
Sbjct: 119 AEVVSGG 125
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 369 QSYFGKISEENIKNNFVLIYELLDEILDFGYPQNSDTGVLKTFITQQ 509
+ + KI EE +K N +L YE D +S ++KTF Q
Sbjct: 952 KDFVTKIEEETLKENPLLFYEYRKASSDMRVLMDSQFLMMKTFARLQ 998
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 26.2 bits (55), Expect = 4.8
Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Frame = +3
Query: 192 AFRVNVIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQ 371
+ RVN+ + +S +N + T+ +H++ + + +A+VFEF K +
Sbjct: 839 SIRVNIAGVKITAKSSTSNSSSTAEYHVRSRHAVIP--VNNRYRSAVVFEF-RKQLQRKH 895
Query: 372 SYFGKI----SEENIKNNF-VLIY------ELLDEILDFGYP 464
+ F + E+N++ N V I+ +L ++DF +P
Sbjct: 896 NVFAMVWLVDLEDNVEQNIRVPIFTSSKPAHVLQNMIDFDHP 937
>SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +3
Query: 363 VMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQNS 473
V++++ G+I+++ ++ V+IY + D L FG S
Sbjct: 113 VLKAHVGRITDDTPQHQGVVIYSMNDTPLGFGVTARS 149
>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 715
Score = 26.2 bits (55), Expect = 4.8
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -1
Query: 308 CDCCQPNICTLDMEERCACNVGNR 237
C C +C L +E C C++ N+
Sbjct: 675 CSCKSITVCPLHIEYLCKCDLSNK 698
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 26.2 bits (55), Expect = 4.8
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +3
Query: 18 YVQFLKGCHR*IAITLKPILKACEASPTMIGGLFVYNHKGEVLISRVYRDDIGRNAVD 191
+V ++ G R I + L P+L + PT+ +NH G++ + R + G N+ D
Sbjct: 737 HVSYVTGVIRSIDLQL-PVLLSKFMKPTIFDSYDFFNHWGQMGVEREAQLTFGLNSKD 793
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 26.2 bits (55), Expect = 4.8
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -3
Query: 492 SSGPQYQNSEGNQSPRSHQATHRSEQSYS*CSLQKSCQNTIASHQ*SSTGTQIP 331
SS P +SE NQ P S Q +Y+ ++ S + SS+GT P
Sbjct: 10 SSRPPSVHSERNQKPSSSQFLGVPSSNYNQRENSSRSGSSTISREPSSSGTMYP 63
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 226 RCDHLLPTLHAHLSSISSVQIFGWQQSQSKM*TR 327
RC + +L H+S + SV + W Q++ TR
Sbjct: 51 RCSGVHRSLGVHVSRVKSVDLDSWTDEQTENMTR 84
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 229 CDHLLPTLHAHLSSISSVQIF 291
CD L+ LHA L SSV +F
Sbjct: 118 CDRLVRQLHASLEDASSVGLF 138
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 11 PPLRSISKGXSSLNRNYIETN 73
PP+ ++SKG +S+ + ETN
Sbjct: 346 PPMLNLSKGSTSVEPTFCETN 366
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,964,008
Number of Sequences: 5004
Number of extensions: 60199
Number of successful extensions: 173
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -