Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_B12
         (725 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44)    372   e-103
SB_19443| Best HMM Match : Adap_comp_sub (HMM E-Value=2.2e-20)        141   6e-34
SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   2e-16
SB_36419| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_48498| Best HMM Match : DUF369 (HMM E-Value=2.4)                    30   2.2  
SB_44501| Best HMM Match : Adap_comp_sub (HMM E-Value=2.39622e-43)     30   2.2  
SB_41497| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_26838| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  

>SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44)
          Length = 331

 Score =  372 bits (916), Expect = e-103
 Identities = 170/208 (81%), Positives = 193/208 (92%)
 Frame = +3

Query: 102 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKR 281
           MIGG F+YNHKGEVLISRVYRDDIGRN VDAFRVNVIHAR Q+RSPVTNIARTSFFHI++
Sbjct: 1   MIGGFFIYNHKGEVLISRVYRDDIGRNTVDAFRVNVIHARGQIRSPVTNIARTSFFHIRQ 60

Query: 282 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGY 461
            N+W+AAVT+QNVNAAMVFEFL + +D+M SYFGK++EE IKNNFVLIYELLDEI D+GY
Sbjct: 61  GNVWIAAVTRQNVNAAMVFEFLFRTVDIMMSYFGKVTEEGIKNNFVLIYELLDEIADYGY 120

Query: 462 PQNSDTGVLKTFITQQGIKSASKEEQAQITSQVTGQIGWRREGIKYRRNELFLDVLXYVN 641
           PQ +DT +LKTFITQQG+K+ ++EEQAQITSQVTGQIGWRR+GIKYRRNELFLDVL  VN
Sbjct: 121 PQKTDTAILKTFITQQGVKTQTREEQAQITSQVTGQIGWRRDGIKYRRNELFLDVLESVN 180

Query: 642 LLMSPQGQVLSAHVAGKVVMXSYLSGMP 725
           LLMSPQGQVLSAHV+G+VVM S+LSGMP
Sbjct: 181 LLMSPQGQVLSAHVSGRVVMKSFLSGMP 208


>SB_19443| Best HMM Match : Adap_comp_sub (HMM E-Value=2.2e-20)
          Length = 216

 Score =  141 bits (341), Expect = 6e-34
 Identities = 65/144 (45%), Positives = 99/144 (68%)
 Frame = +3

Query: 294 LAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQNS 473
           +   TK+N N A++F FL +++ V   YF ++ EE+I++NFV+IYEL+DE++DFGYPQ +
Sbjct: 12  VVCTTKKNANVALIFVFLHRMVHVFIDYFKELEEESIRDNFVIIYELMDELVDFGYPQFT 71

Query: 474 DTGVLKTFITQQGIKSASKEEQAQITSQVTGQIGWRREGIKYRRNELFLDVLXYVNLLMS 653
           +T +L+ +ITQ+G K    E   +    +T  + WR + IKYR+NE+FLDV+  VNL++S
Sbjct: 72  ETKILQEYITQEGHK---LELAPKPPPALTNAVSWRGDNIKYRKNEVFLDVIESVNLMVS 128

Query: 654 PQGQVLSAHVAGKVVMXSYLSGMP 725
             G VL + + G V M  YL+GMP
Sbjct: 129 SSGNVLRSEINGTVKMRCYLTGMP 152


>SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 570

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 48/125 (38%), Positives = 73/125 (58%), Gaps = 1/125 (0%)
 Frame = +3

Query: 354 IIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQNSDTGVLKTFITQQGIKSASKE 533
           + ++ + Y G I+EE IK N  LIYELLDE+LDFGY Q + T  LK ++  Q       E
Sbjct: 18  VCNLCKDYCGIINEEAIKCNLPLIYELLDEVLDFGYVQATSTEALKAYVFNQ---PELVE 74

Query: 534 EQAQITSQVT-GQIGWRREGIKYRRNELFLDVLXYVNLLMSPQGQVLSAHVAGKVVMXSY 710
              Q   Q + G + +R    K  +NE+F+D+L  + +L+SP G +L + + G + M S+
Sbjct: 75  NSGQSVWQCSGGNVIFR----KSHKNEIFVDLLERLTVLISPNGSILRSDIDGCIQMKSF 130

Query: 711 LSGMP 725
           L+G P
Sbjct: 131 LTGSP 135


>SB_36419| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 170

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 405 KNNFVLIYELLDEILDFGYPQNSDTGVLKTFITQQGI 515
           K   V I +LL+E+LD G+P  ++  VLK  I    I
Sbjct: 121 KKGAVYILQLLEEMLDNGFPLATEPNVLKELIRPPSI 157


>SB_48498| Best HMM Match : DUF369 (HMM E-Value=2.4)
          Length = 734

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/68 (26%), Positives = 33/68 (48%)
 Frame = +3

Query: 96  PTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHI 275
           PT +G +   ++ G  +I+R+ +   G     +    VI   Q+++  VTN   +  FH 
Sbjct: 225 PTHVGQVIHSSYGGSAIIARLKKSVHGSRFEGSVIAEVIEPFQELQDDVTNHPLSVSFHG 284

Query: 276 KRANIWLA 299
           + A + LA
Sbjct: 285 ENATLKLA 292


>SB_44501| Best HMM Match : Adap_comp_sub (HMM E-Value=2.39622e-43)
          Length = 822

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = +3

Query: 576 WRREGIKYRRNELFLDVLXYVNLLMSPQGQVLSAHVAGKVVMXSYLSGMP 725
           +R  GI YR++E+F+DV    + L+   G V       +V + ++++G P
Sbjct: 491 YRDRGITYRKDEVFVDVDDTCHALLDGTGNVKKLGGRVQVKIRAFVTGDP 540


>SB_41497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 792

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -1

Query: 386 LAKIRLHHINDLQQEL-KYHGRVHILLCDCCQ 294
           +A+I+ + I D Q++  KY G  H+L+ DCC+
Sbjct: 732 IARIKRYAIQDRQKDRPKYTGFHHMLMYDCCR 763


>SB_26838| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -1

Query: 386 LAKIRLHHINDLQQEL-KYHGRVHILLCDCCQ 294
           +A+I+ + I D Q++  KY G  H+L+ DCC+
Sbjct: 280 IARIKRYAIQDRQKDRPKYTGFHHMLMYDCCR 311


>SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1220

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +2

Query: 182 CCGRIQSECDPCSPAGAITCYQHCTHIFLPYQACKYLAG-SSH 307
           CC R+  +   C   G I  YQ   H  LP+    YLAG  SH
Sbjct: 262 CCSRLNVQRYGCYTTGHINDYQQIFHYALPHGT--YLAGVESH 302


>SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1378

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +3

Query: 288 IWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENI-KNNFVLIYELLDEILDFGYP 464
           +++  +T ++ N     E L     V+  Y   + E  I ++ F LI+   DEI+  GY 
Sbjct: 535 LYMLLITTKHSNILEDLETLRLFSRVIPEYCRAMEESEIGEHAFELIFAF-DEIVALGYR 593

Query: 465 QNSDTGVLKTF 497
           +N +   ++TF
Sbjct: 594 ENVNLAQIRTF 604


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,836,528
Number of Sequences: 59808
Number of extensions: 478332
Number of successful extensions: 1313
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)