Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_B12
(725 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : short... 384 e-107
AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : short... 376 e-104
L26290-1|AAA27981.1| 441|Caenorhabditis elegans clathrin-associ... 373 e-104
Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical pr... 183 1e-46
L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein ( Caeno... 183 1e-46
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 176 1e-44
U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/med... 111 5e-25
AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, smal... 42 3e-04
U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical pr... 40 0.002
U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chai... 35 0.068
Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical pr... 31 1.1
AL021480-5|CAJ21557.1| 432|Caenorhabditis elegans Hypothetical ... 31 1.1
AL021480-4|CAA16329.2| 431|Caenorhabditis elegans Hypothetical ... 31 1.1
U80027-19|AAC48129.2| 313|Caenorhabditis elegans F-box a protei... 29 4.5
U21309-6|AAT92086.1| 541|Caenorhabditis elegans Hypothetical pr... 28 5.9
U21309-5|AAT92085.1| 536|Caenorhabditis elegans Hypothetical pr... 28 5.9
U21309-4|AAN73883.1| 546|Caenorhabditis elegans Hypothetical pr... 28 5.9
AY314778-1|AAQ84885.1| 546|Caenorhabditis elegans calcitonin re... 28 5.9
AY314777-1|AAQ84884.1| 541|Caenorhabditis elegans calcitonin re... 28 5.9
AY314776-1|AAQ84883.1| 536|Caenorhabditis elegans calcitonin re... 28 5.9
AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical ... 28 5.9
AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical ... 28 5.9
U13642-9|AAG00035.1| 187|Caenorhabditis elegans Clock (biologic... 28 7.8
>AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform b protein.
Length = 435
Score = 384 bits (945), Expect = e-107
Identities = 177/208 (85%), Positives = 196/208 (94%)
Frame = +3
Query: 102 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKR 281
MIGGLFVYNHKGEVLISR+YRDD+ RNAVDAFRVNVIHARQQVRSPVTN+ARTSFFH+KR
Sbjct: 1 MIGGLFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVIHARQQVRSPVTNMARTSFFHVKR 60
Query: 282 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGY 461
N+W+ AVT+QNVNAAMVFEFL + D MQSYFGK++EEN+KNNFVLIYELLDEILDFGY
Sbjct: 61 GNVWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGY 120
Query: 462 PQNSDTGVLKTFITQQGIKSASKEEQAQITSQVTGQIGWRREGIKYRRNELFLDVLXYVN 641
PQN+D GVLKTFITQQG+++A+KEEQ+QITSQVTGQIGWRREGIKYRRNELFLDV+ YVN
Sbjct: 121 PQNTDPGVLKTFITQQGVRTATKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVIEYVN 180
Query: 642 LLMSPQGQVLSAHVAGKVVMXSYLSGMP 725
LLM+ QGQVLSAHVAGKV M SYLSGMP
Sbjct: 181 LLMNQQGQVLSAHVAGKVAMKSYLSGMP 208
>AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform a protein.
Length = 441
Score = 376 bits (924), Expect = e-104
Identities = 177/214 (82%), Positives = 196/214 (91%), Gaps = 6/214 (2%)
Frame = +3
Query: 102 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKR 281
MIGGLFVYNHKGEVLISR+YRDD+ RNAVDAFRVNVIHARQQVRSPVTN+ARTSFFH+KR
Sbjct: 1 MIGGLFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVIHARQQVRSPVTNMARTSFFHVKR 60
Query: 282 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGY 461
N+W+ AVT+QNVNAAMVFEFL + D MQSYFGK++EEN+KNNFVLIYELLDEILDFGY
Sbjct: 61 GNVWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGY 120
Query: 462 PQNSDTGVLKTFITQQGIKSA------SKEEQAQITSQVTGQIGWRREGIKYRRNELFLD 623
PQN+D GVLKTFITQQG+++A +KEEQ+QITSQVTGQIGWRREGIKYRRNELFLD
Sbjct: 121 PQNTDPGVLKTFITQQGVRTADAPVPVTKEEQSQITSQVTGQIGWRREGIKYRRNELFLD 180
Query: 624 VLXYVNLLMSPQGQVLSAHVAGKVVMXSYLSGMP 725
V+ YVNLLM+ QGQVLSAHVAGKV M SYLSGMP
Sbjct: 181 VIEYVNLLMNQQGQVLSAHVAGKVAMKSYLSGMP 214
>L26290-1|AAA27981.1| 441|Caenorhabditis elegans
clathrin-associated protein homologueprotein.
Length = 441
Score = 373 bits (918), Expect = e-104
Identities = 176/214 (82%), Positives = 195/214 (91%), Gaps = 6/214 (2%)
Frame = +3
Query: 102 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKR 281
MIGGLFVYNHKGEVLISR+YRDD+ RNAVDAFRVNVIHARQQVRSPVTN+ARTSFFH+KR
Sbjct: 1 MIGGLFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVIHARQQVRSPVTNMARTSFFHVKR 60
Query: 282 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGY 461
N+W+ AVT+QNVNAAMVF FL + D MQSYFGK++EEN+KNNFVLIYELLDEILDFGY
Sbjct: 61 GNVWICAVTRQNVNAAMVFAFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGY 120
Query: 462 PQNSDTGVLKTFITQQGIKSA------SKEEQAQITSQVTGQIGWRREGIKYRRNELFLD 623
PQN+D GVLKTFITQQG+++A +KEEQ+QITSQVTGQIGWRREGIKYRRNELFLD
Sbjct: 121 PQNTDPGVLKTFITQQGVRTADAPVPVTKEEQSQITSQVTGQIGWRREGIKYRRNELFLD 180
Query: 624 VLXYVNLLMSPQGQVLSAHVAGKVVMXSYLSGMP 725
V+ YVNLLM+ QGQVLSAHVAGKV M SYLSGMP
Sbjct: 181 VIEYVNLLMNQQGQVLSAHVAGKVAMKSYLSGMP 214
>Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical
protein K11D2.3a protein.
Length = 422
Score = 183 bits (445), Expect = 1e-46
Identities = 88/206 (42%), Positives = 132/206 (64%), Gaps = 2/206 (0%)
Frame = +3
Query: 114 LFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRS--PVTNIARTSFFHIKRAN 287
+F+ + KG+ +ISR YR DI A+D F ++++ +++ S PV T+F IK N
Sbjct: 6 MFILDLKGKTIISRNYRGDIDMTAIDKF-IHLLMEKEEEGSAAPVLTYQDTNFVFIKHTN 64
Query: 288 IWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQ 467
I+L + + NVN M+ FL K ++V YF + EE++++NFV+IYELLDE++DFG+PQ
Sbjct: 65 IYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDNFVVIYELLDEMMDFGFPQ 124
Query: 468 NSDTGVLKTFITQQGIKSASKEEQAQITSQVTGQIGWRREGIKYRRNELFLDVLXYVNLL 647
+++ +L+ +ITQ+G K S VT + WR EGIKYR+NE+FLDV+ VN+L
Sbjct: 125 TTESRILQEYITQEGQKLISAPRPPM---AVTNAVSWRSEGIKYRKNEVFLDVIESVNML 181
Query: 648 MSPQGQVLSAHVAGKVVMXSYLSGMP 725
S G VL + + G V M YL+GMP
Sbjct: 182 ASANGTVLQSEIVGSVKMRVYLTGMP 207
>L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein (
Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
Length = 422
Score = 183 bits (445), Expect = 1e-46
Identities = 88/206 (42%), Positives = 132/206 (64%), Gaps = 2/206 (0%)
Frame = +3
Query: 114 LFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRS--PVTNIARTSFFHIKRAN 287
+F+ + KG+ +ISR YR DI A+D F ++++ +++ S PV T+F IK N
Sbjct: 6 MFILDLKGKTIISRNYRGDIDMTAIDKF-IHLLMEKEEEGSAAPVLTYQDTNFVFIKHTN 64
Query: 288 IWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQ 467
I+L + + NVN M+ FL K ++V YF + EE++++NFV+IYELLDE++DFG+PQ
Sbjct: 65 IYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDNFVVIYELLDEMMDFGFPQ 124
Query: 468 NSDTGVLKTFITQQGIKSASKEEQAQITSQVTGQIGWRREGIKYRRNELFLDVLXYVNLL 647
+++ +L+ +ITQ+G K S VT + WR EGIKYR+NE+FLDV+ VN+L
Sbjct: 125 TTESRILQEYITQEGQKLISAPRPPM---AVTNAVSWRSEGIKYRKNEVFLDVIESVNML 181
Query: 648 MSPQGQVLSAHVAGKVVMXSYLSGMP 725
S G VL + + G V M YL+GMP
Sbjct: 182 ASANGTVLQSEIVGSVKMRVYLTGMP 207
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin,
mu/medium chain (clathrinassociated complex) protein 1
protein.
Length = 426
Score = 176 bits (429), Expect = 1e-44
Identities = 87/208 (41%), Positives = 130/208 (62%), Gaps = 1/208 (0%)
Frame = +3
Query: 105 IGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHIKR 281
I GLF+ + KG V+ISR YR D+ + ++ F ++ + SPV S+ +IK
Sbjct: 3 ISGLFILDLKGNVVISRNYRGDVDMSCIEKFMPLLVEKEDEGSASPVLVHQGISYTYIKY 62
Query: 282 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGY 461
N++L ++K+N N +V L KI++V YF + EE +++NFV+IYEL DE+LDFGY
Sbjct: 63 MNVYLVTISKKNTNVILVLSALYKIVEVFCEYFKTLEEEAVRDNFVIIYELFDEMLDFGY 122
Query: 462 PQNSDTGVLKTFITQQGIKSASKEEQAQITSQVTGQIGWRREGIKYRRNELFLDVLXYVN 641
PQ +++ +L+ FITQQG ++ E + VT + WR EGIKYR+NE+FLDV+ VN
Sbjct: 123 PQTTESKILQEFITQQG----NRLETVRPPMAVTNAVSWRSEGIKYRKNEVFLDVIESVN 178
Query: 642 LLMSPQGQVLSAHVAGKVVMXSYLSGMP 725
+L + QG VL + + G + LSGMP
Sbjct: 179 MLANAQGTVLRSEIVGSIRFRVVLSGMP 206
>U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/medium
chain (clathrinassociated complex) protein 3 protein.
Length = 414
Score = 111 bits (267), Expect = 5e-25
Identities = 65/218 (29%), Positives = 114/218 (52%), Gaps = 10/218 (4%)
Frame = +3
Query: 102 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAF---RVNVIHARQQVRSPVTNIARTSFFH 272
M+ LF N G+VL+ + ++ I R+ D F + IH P+ + +
Sbjct: 1 MLNSLFFVNSSGDVLLEKHWKSVIHRSICDYFFDIQKKSIHPEDV--PPIISTPHHYLIN 58
Query: 273 IKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILD 452
+ + N++L AV MV EFL ++I YF + S+ ++K N V+++ELLDE+LD
Sbjct: 59 VYQNNLFLVAVITVETPPLMVIEFLHRVIQTFTQYFDEFSDSSMKENCVMVFELLDEMLD 118
Query: 453 FGYPQNSDTGVLKTFITQQG-IKSASKEEQAQIT---SQVTGQ---IGWRREGIKYRRNE 611
G+P ++ +L+ I +++ + + + + TGQ I WRR+G+KY NE
Sbjct: 119 NGFPLVTEMNILQDLIKPPNFLRNIANQVTGRTNLSETLPTGQLSNIPWRRQGVKYTNNE 178
Query: 612 LFLDVLXYVNLLMSPQGQVLSAHVAGKVVMXSYLSGMP 725
+ DV+ +++++ QG + A + G V + LSGMP
Sbjct: 179 AYFDVIEEIDVIVDKQGSTVFAEIQGYVDVCCKLSGMP 216
>AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, small
chain (clathrinassociated complex) protein 1 protein.
Length = 157
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +3
Query: 282 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFG- 458
A+++ +QN N + E + + ++++ YFG + E +I NF Y +LDE L G
Sbjct: 63 ASLYFCCAIEQNDNELITLEVIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLAGE 122
Query: 459 YPQNSDTGVLKTFITQQGIK 518
+ S VLK Q I+
Sbjct: 123 IQETSKKQVLKAIAAQDLIQ 142
>U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical
protein C13B9.3 protein.
Length = 515
Score = 39.9 bits (89), Expect = 0.002
Identities = 33/133 (24%), Positives = 65/133 (48%), Gaps = 7/133 (5%)
Frame = +3
Query: 120 VYNHKGEVLISRVYRDDIGRNA----VDAFRVNVIHARQQVRSPVTNIARTSFFHIKRA- 284
+ + G++L++R + +D+ R+ VDAF + + ++ T + S ++
Sbjct: 8 ILSKTGKLLVARQFVNDMMRSRLEGLVDAFPKLIGNEKEAATRQHTFVETDSVRYVYHPL 67
Query: 285 -NIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENI-KNNFVLIYELLDEILDFG 458
NI+L VT +N N E L + V+ Y E+ I ++F LI+ DE++ G
Sbjct: 68 DNIYLVLVTTKNSNILEDLETLRLFVRVIPEYCRSNEEKEILAHDFDLIF-AFDEVVTLG 126
Query: 459 YPQNSDTGVLKTF 497
Y ++ + ++TF
Sbjct: 127 YRESVNLAQIRTF 139
>U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chain
(clathrin associatedcomplex) protein 2 protein.
Length = 142
Score = 34.7 bits (76), Expect = 0.068
Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 7/140 (5%)
Frame = +3
Query: 102 MIGGLFVYNHKGEVLISRVYR--DDIGRNAVDAFRVNVIHARQQVRSPV-TNIARTSFFH 272
MI + + N G+ +++ Y DD + + + +HA VR TN F
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMHFDDDEKQKL----IEEVHACVTVRDAKHTNFVEFRNFK 56
Query: 273 I---KRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDE 443
I + A ++ N E + ++V+ YF + E ++ NF +Y ++DE
Sbjct: 57 IVYRRYAGLYFCICVDITDNNLYYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDE 116
Query: 444 ILDFG-YPQNSDTGVLKTFI 500
+ G + S T VLK +
Sbjct: 117 MFLAGEIRETSQTKVLKQLL 136
>Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical protein
C14C10.5 protein.
Length = 1908
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 147 ISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFF 269
+ R++RDDIG V++ N I R++ ++ + + FF
Sbjct: 1761 VFRIHRDDIGMILVNSLNDNQIEVRERATDALSTLLQAKFF 1801
>AL021480-5|CAJ21557.1| 432|Caenorhabditis elegans Hypothetical
protein Y39E4A.3b protein.
Length = 432
Score = 30.7 bits (66), Expect = 1.1
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Frame = +3
Query: 426 YELLDEILDFGYPQNSDTGVLKTFITQQGIKSASKEE--QAQITSQVTGQIGWRREGIKY 599
Y DE+ +G + T K +IT++G + KE Q ++ +V + + K
Sbjct: 329 YRSSDEVQTWGDKDHPITR-FKKYITERGWWNEEKEMEWQKEVKKRVLTEFAAAEKRKKA 387
Query: 600 RRNELFLDVLXYVNLLMSPQGQVLSAHVA 686
++LF DV + L + Q L AHVA
Sbjct: 388 HYHDLFEDVYDELPLRLRRQRDELDAHVA 416
>AL021480-4|CAA16329.2| 431|Caenorhabditis elegans Hypothetical
protein Y39E4A.3a protein.
Length = 431
Score = 30.7 bits (66), Expect = 1.1
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Frame = +3
Query: 426 YELLDEILDFGYPQNSDTGVLKTFITQQGIKSASKEE--QAQITSQVTGQIGWRREGIKY 599
Y DE+ +G + T K +IT++G + KE Q ++ +V + + K
Sbjct: 328 YRSSDEVQTWGDKDHPITR-FKKYITERGWWNEEKEMEWQKEVKKRVLTEFAAAEKRKKA 386
Query: 600 RRNELFLDVLXYVNLLMSPQGQVLSAHVA 686
++LF DV + L + Q L AHVA
Sbjct: 387 HYHDLFEDVYDELPLRLRRQRDELDAHVA 415
>U80027-19|AAC48129.2| 313|Caenorhabditis elegans F-box a protein
protein 64 protein.
Length = 313
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +3
Query: 60 TLKPILKACEASPTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIH 215
T + +++P I +F ++ G S Y DDI + A+D FRV H
Sbjct: 255 TCRIYFNVSQSNPVDIAKVFKPDYVGGNEYSFEYSDDIHKFAIDCFRVGESH 306
>U21309-6|AAT92086.1| 541|Caenorhabditis elegans Hypothetical
protein C13B9.4c protein.
Length = 541
Score = 28.3 bits (60), Expect = 5.9
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Frame = +3
Query: 240 VTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENI----- 404
+ N+ R + ++ +N A K++V AAM+ LL + ++MQ+ + +NI
Sbjct: 350 ICNVIRVLYSKVRESNNTSEAGLKKSVKAAMMLLPLLGVPNIMQTIPFAPTRDNIMVFAV 409
Query: 405 ---KNNFVLIYELLDEILDFGYPQNSDTGVLKTFITQQGIKSASKEE 536
+F +Y+ L + + VLKTF + + S+ E
Sbjct: 410 WTYTASFTYMYQGLMVASIYCFTNKEVNHVLKTFYARYRLLHKSQNE 456
>U21309-5|AAT92085.1| 536|Caenorhabditis elegans Hypothetical
protein C13B9.4b protein.
Length = 536
Score = 28.3 bits (60), Expect = 5.9
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Frame = +3
Query: 240 VTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENI----- 404
+ N+ R + ++ +N A K++V AAM+ LL + ++MQ+ + +NI
Sbjct: 340 ICNVIRVLYSKVRESNNTSEAGLKKSVKAAMMLLPLLGVPNIMQTIPFAPTRDNIMVFAV 399
Query: 405 ---KNNFVLIYELLDEILDFGYPQNSDTGVLKTFITQQGIKSASKEE 536
+F +Y+ L + + VLKTF + + S+ E
Sbjct: 400 WTYTASFTYMYQGLMVASIYCFTNKEVNHVLKTFYARYRLLHKSQNE 446
>U21309-4|AAN73883.1| 546|Caenorhabditis elegans Hypothetical
protein C13B9.4a protein.
Length = 546
Score = 28.3 bits (60), Expect = 5.9
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Frame = +3
Query: 240 VTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENI----- 404
+ N+ R + ++ +N A K++V AAM+ LL + ++MQ+ + +NI
Sbjct: 350 ICNVIRVLYSKVRESNNTSEAGLKKSVKAAMMLLPLLGVPNIMQTIPFAPTRDNIMVFAV 409
Query: 405 ---KNNFVLIYELLDEILDFGYPQNSDTGVLKTFITQQGIKSASKEE 536
+F +Y+ L + + VLKTF + + S+ E
Sbjct: 410 WTYTASFTYMYQGLMVASIYCFTNKEVNHVLKTFYARYRLLHKSQNE 456
>AY314778-1|AAQ84885.1| 546|Caenorhabditis elegans calcitonin
receptor-like proteinSEB-1C protein.
Length = 546
Score = 28.3 bits (60), Expect = 5.9
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Frame = +3
Query: 240 VTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENI----- 404
+ N+ R + ++ +N A K++V AAM+ LL + ++MQ+ + +NI
Sbjct: 350 ICNVIRVLYSKVRESNNTSEAGLKKSVKAAMMLLPLLGVPNIMQTIPFAPTRDNIMVFAV 409
Query: 405 ---KNNFVLIYELLDEILDFGYPQNSDTGVLKTFITQQGIKSASKEE 536
+F +Y+ L + + VLKTF + + S+ E
Sbjct: 410 WTYTASFTYMYQGLMVASIYCFTNKEVNHVLKTFYARYRLLHKSQNE 456
>AY314777-1|AAQ84884.1| 541|Caenorhabditis elegans calcitonin
receptor-like proteinSEB-1B protein.
Length = 541
Score = 28.3 bits (60), Expect = 5.9
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Frame = +3
Query: 240 VTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENI----- 404
+ N+ R + ++ +N A K++V AAM+ LL + ++MQ+ + +NI
Sbjct: 350 ICNVIRVLYSKVRESNNTSEAGLKKSVKAAMMLLPLLGVPNIMQTIPFAPTRDNIMVFAV 409
Query: 405 ---KNNFVLIYELLDEILDFGYPQNSDTGVLKTFITQQGIKSASKEE 536
+F +Y+ L + + VLKTF + + S+ E
Sbjct: 410 WTYTASFTYMYQGLMVASIYCFTNKEVNHVLKTFYARYRLLHKSQNE 456
>AY314776-1|AAQ84883.1| 536|Caenorhabditis elegans calcitonin
receptor-like proteinSEB-1A protein.
Length = 536
Score = 28.3 bits (60), Expect = 5.9
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Frame = +3
Query: 240 VTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENI----- 404
+ N+ R + ++ +N A K++V AAM+ LL + ++MQ+ + +NI
Sbjct: 340 ICNVIRVLYSKVRESNNTSEAGLKKSVKAAMMLLPLLGVPNIMQTIPFAPTRDNIMVFAV 399
Query: 405 ---KNNFVLIYELLDEILDFGYPQNSDTGVLKTFITQQGIKSASKEE 536
+F +Y+ L + + VLKTF + + S+ E
Sbjct: 400 WTYTASFTYMYQGLMVASIYCFTNKEVNHVLKTFYARYRLLHKSQNE 446
>AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical
protein Y73F8A.9 protein.
Length = 419
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +2
Query: 185 CGRIQSECDPCSPAGAITCYQHCTHIFLPYQACKYLAGSSHKAKCERGH 331
C + Q C+PA +CYQ C+ L C L S + C++ +
Sbjct: 361 CIQQQQPMQQCAPACTQSCYQSCSTAQLVQMPC--LTQSVNSCSCQQNY 407
>AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical
protein Y73F8A.8 protein.
Length = 420
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +2
Query: 185 CGRIQSECDPCSPAGAITCYQHCTHIFLPYQACKYLAGSSHKAKCERGH 331
C + Q C+PA +CYQ C+ L C L S + C++ +
Sbjct: 362 CIQQQQPMQQCAPACTQSCYQSCSTAQLVQMPC--LTQSVNSCSCQQNY 408
>U13642-9|AAG00035.1| 187|Caenorhabditis elegans Clock (biological
timing) abnormalityprotein 1 protein.
Length = 187
Score = 27.9 bits (59), Expect = 7.8
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
Frame = -1
Query: 476 IRILRVTKVQDLIKQLIDQNKVILDVLFRNLAKIRLHH--INDLQQELKYHGRVHILLCD 303
+ +L+ + V +IK++ D+ K LD + R AK + H + + Y V L
Sbjct: 41 LAVLQGSSVGSVIKKMWDEEKEHLDTMERLAAKHNVPHTVFSPVFSVAAYALGVGSALLG 100
Query: 302 CCQPNICTLDMEERCACNVGNR*SHLLASMDHIHSECVHSIT 177
CT+ +EE + ++ LLA H E + +T
Sbjct: 101 KEGAMACTIAVEELIGQHYNDQLKELLADDPETHKELLKILT 142
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,689,888
Number of Sequences: 27780
Number of extensions: 352738
Number of successful extensions: 1113
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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