Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_B11
(847 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 47 3e-06
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 31 0.27
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.83
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 29 1.1
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 28 1.4
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po... 28 1.4
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 27 4.4
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb... 26 5.8
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 26 7.7
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb... 26 7.7
SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi... 26 7.7
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 47.2 bits (107), Expect = 3e-06
Identities = 49/193 (25%), Positives = 84/193 (43%), Gaps = 2/193 (1%)
Frame = +2
Query: 239 PRTHS-SKHASSIPSPFSTSPRKLQEMAMPSTEGHDVTNISGISMKQYEEQLNGLRKENF 415
P T++ SK S I P S + E + S +++K+ ++ LRKE F
Sbjct: 207 PTTNALSKKISDILIPASAMKDLKDRKNALAKEFEESQPGSSLTLKEQANVIDNLRKEVF 266
Query: 416 HLKLRIYFLEEKLGNGSPPAVQGLLEHNVRLQVEVEELRRQLTDKQELLAAAAEAIDVLE 595
LKL+ YFL ++L VQ +++ N+ L+ EL+R + ++ ++ I +
Sbjct: 267 GLKLKCYFLYDQLNKFHDQEVQDIMKQNIDLKTLTMELQRAVAGYEKKISGLESRIKP-D 325
Query: 596 QQGSVSTDSMEVS-MNNSASMKKAADPHDETTEKRDAVDDTCAESESAGDYLXVTVNNED 772
Q ++ST S S + S A ETT++ A + +S V NED
Sbjct: 326 QSFNLSTPSPAPSNLITLQSRYSQALSELETTKRAFA---ALRKEKSKKTNYSVGAYNED 382
Query: 773 LDELMKLXRENRK 811
+ L + R+
Sbjct: 383 RNVLSNMLDNERR 395
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 30.7 bits (66), Expect = 0.27
Identities = 35/182 (19%), Positives = 71/182 (39%), Gaps = 1/182 (0%)
Frame = +2
Query: 251 SSKHASSIPSPFSTSPRKLQEMAMPSTEGHDVTNISGISMKQYEEQLNGLRKENFHLKLR 430
+ + ++I FS + ++ + + S + N + + ++ L E LK +
Sbjct: 885 TQERLANIEDSFSETKQQNENLQRESASLKQINNELESELLEKTSKVETLLSEQNELKEK 944
Query: 431 IYFLEEKLGNGSPPAVQGLLEHNVRLQVEVEELRRQLTDKQELLAAAAEAIDVLEQQ-GS 607
+ LEEK + ++ L E+N + E E Q QE + +D L +
Sbjct: 945 LS-LEEKDLLDTKGELESLRENNATVLSEKAEFNEQCKSLQETIVTKDAELDKLTKYISD 1003
Query: 608 VSTDSMEVSMNNSASMKKAADPHDETTEKRDAVDDTCAESESAGDYLXVTVNNEDLDELM 787
T+ E+ + N +K+ +E V E E++ V++ + +EL
Sbjct: 1004 YKTEIQEMRLTNQKMNEKSIQQEGSLSESLKRVKK--LERENSTLISDVSILKQQKEELS 1061
Query: 788 KL 793
L
Sbjct: 1062 VL 1063
Score = 28.7 bits (61), Expect = 1.1
Identities = 35/134 (26%), Positives = 53/134 (39%), Gaps = 5/134 (3%)
Frame = +2
Query: 362 ISMKQYEEQLNGLRKENFHLKLRIYFLEEKLGNGSPPAVQGLLEHNVRLQVEVEEL---- 529
+S Q ++QL E LK + +K N + L+E N L VE L
Sbjct: 817 LSSTQNDKQLKKRDAEIIELKYEL----KKQQNSKSEVERDLVETNNSLTA-VENLLTTE 871
Query: 530 RRQLTDKQELLAAAAEAIDVLEQQGSVSTDSMEVSMNNSASMKKAADP-HDETTEKRDAV 706
R DK+E+L E + +E S + E SAS+K+ + E EK V
Sbjct: 872 RAIALDKEEILRRTQERLANIEDSFSETKQQNENLQRESASLKQINNELESELLEKTSKV 931
Query: 707 DDTCAESESAGDYL 748
+ +E + L
Sbjct: 932 ETLLSEQNELKEKL 945
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.1 bits (62), Expect = 0.83
Identities = 14/66 (21%), Positives = 35/66 (53%)
Frame = +2
Query: 545 DKQELLAAAAEAIDVLEQQGSVSTDSMEVSMNNSASMKKAADPHDETTEKRDAVDDTCAE 724
+++E + E + S S+ S S ++S+ ++ + ++T EK++ ++ ++
Sbjct: 148 EEEEAVVKIEEKKESSSDSSSESSSSESESESSSSESEEEEEVVEKTEEKKEGSSESSSD 207
Query: 725 SESAGD 742
SES+ D
Sbjct: 208 SESSSD 213
Score = 25.8 bits (54), Expect = 7.7
Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Frame = +2
Query: 443 EEKLGNGSPPAVQGLLEHNVRLQVEVEELRRQLTD-KQELLAAAAE---AIDVLEQQGSV 610
EEK + S + E V++EE + +D E ++ +E + E++ V
Sbjct: 131 EEKKESSSESSSSSESEEEEEAVVKIEEKKESSSDSSSESSSSESESESSSSESEEEEEV 190
Query: 611 STDSMEVSMNNSASMKKAADPHDETTEKRDAVDDTCAESESAGD 742
+ E +S S + D ++E D+ + +ESES+ +
Sbjct: 191 VEKTEEKKEGSSESSSDSESSSDSSSESGDSDSSSDSESESSSE 234
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 28.7 bits (61), Expect = 1.1
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +2
Query: 461 GSPPAVQGLLEHNVRLQVEVEELRRQLTDKQE-LLAAAAEAIDVLEQQGSVSTDSMEVSM 637
GSP + + N RLQ +E+ R L +QE L+ +A + + S S D +++
Sbjct: 130 GSPSSENKDSDRNSRLQQLIEKKRNALKKEQEDLIQNSATSHSKSDNLDSESADDSDLAD 189
Query: 638 NNSASMKKAADPHDETTEKR 697
+ S K +D K+
Sbjct: 190 ESELSKKYTSDRKIRNASKK 209
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 626 EVSMNNSASMKKAADPHDETTEKRDAVDDTCAESESA 736
E+ + + + A +PHDET E+ + T E+E A
Sbjct: 345 EIRRTSGSKISIAKEPHDETGERMFTITGTHEENEKA 381
>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 28.3 bits (60), Expect = 1.4
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +2
Query: 506 LQVEVEELRRQLTDKQELLAAAAE---AIDVLEQQGSVSTDSMEVSMNN 643
+Q E+EE RRQL ++E L A E A SVST VS N
Sbjct: 360 VQKEIEEKRRQLLAREEALRALEEKLAASTAAMANASVSTLPSSVSSTN 408
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 26.6 bits (56), Expect = 4.4
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -3
Query: 776 PNPHCSLSPXSNHPQTPIPHTYRRRHPASLLSRHVDRRPFSSKRY--CSWTPPY 621
P+PH S+ S+ ++P+ R R S SRH R S RY S +PPY
Sbjct: 131 PSPHSSVD--SHQSRSPVRSRDRDRSSRSSRSRHPSSR--SRHRYDDYSRSPPY 180
>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 293
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 198 VDL*QSFEEKWPHYLERTVLNMLRVYHHRL 287
+D Q F ++ HY + + NM+ +HHRL
Sbjct: 141 IDSWQYFWHRYLHY-NKKLYNMIHAHHHRL 169
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 25.8 bits (54), Expect = 7.7
Identities = 20/67 (29%), Positives = 35/67 (52%)
Frame = +2
Query: 512 VEVEELRRQLTDKQELLAAAAEAIDVLEQQGSVSTDSMEVSMNNSASMKKAADPHDETTE 691
V VE++ + +++E +AAA V++ QGSV + + + S+ + DPH T E
Sbjct: 419 VIVEQVEDENEEEEEAIAAAENNNGVIQVQGSVVSFLERLDDEFTRSL-QMIDPH--TPE 475
Query: 692 KRDAVDD 712
D + D
Sbjct: 476 YIDRLKD 482
>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 25.8 bits (54), Expect = 7.7
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 692 SLLSRHVDRRPFSSKRYCSWTPPYCPSRLNPA 597
SLL R D++ S R CS PY P+ PA
Sbjct: 356 SLLYRLTDKKFKISVRVCSQRYPYPPNATKPA 387
>SPAP27G11.02 |||TPR repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 25.8 bits (54), Expect = 7.7
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +2
Query: 446 EKLGNGSPPAVQGLLEHNVRLQVEVEELRRQLTDKQELLAAAAEAIDVLEQQGSVSTDSM 625
EK+ SPP VQG+ L L + + ++L ++ D LEQ+ +++ +
Sbjct: 100 EKMDMESPP-VQGIRLQMANLLASAGALHKAWSMYWDILERTSKLPDFLEQRVLIASKLI 158
Query: 626 EVS--MNNSASMKKAAD 670
E+S + KAAD
Sbjct: 159 ELSEPLGLQKDATKAAD 175
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,040,011
Number of Sequences: 5004
Number of extensions: 58689
Number of successful extensions: 182
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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