Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_B10
(812 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc... 177 2e-45
SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyc... 150 3e-37
SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3 |Schizosac... 103 4e-23
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 43 6e-05
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 36 0.009
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa... 29 1.0
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 3.2
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 27 3.2
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac... 26 5.5
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 26 5.5
SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12 |Schizos... 26 7.3
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy... 26 7.3
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 26 7.3
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 25 9.7
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 25 9.7
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 25 9.7
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 25 9.7
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 25 9.7
>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 177 bits (430), Expect = 2e-45
Identities = 81/143 (56%), Positives = 108/143 (75%), Gaps = 1/143 (0%)
Frame = +3
Query: 132 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAK-HTNFVEFRNFKIVY 308
MI+FILIQNR GK RL+K+Y+ FDDDEK +L +H +++ R+ K NF+E+ N K+VY
Sbjct: 1 MIQFILIQNRHGKNRLSKYYVPFDDDEKVRLKARIHQLISQRNQKFQANFLEWENSKLVY 60
Query: 309 RRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFL 488
RRYAGLYFC CVD DN+L LE IH FVE+L+ +F NVCELDL+FNFYKV ++DE+ L
Sbjct: 61 RRYAGLYFCFCVDSTDNDLAILEMIHFFVEILDSFFGNVCELDLIFNFYKVSAILDEIIL 120
Query: 489 AGEIRETSQTKVLKQLLMLNSLE 557
GEI E+++ VL+++ L LE
Sbjct: 121 GGEIGESNKKSVLERIEALEKLE 143
>SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 162
Score = 150 bits (363), Expect = 3e-37
Identities = 69/135 (51%), Positives = 95/135 (70%)
Frame = +3
Query: 135 IRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRR 314
I+F L+ +R GK RLAKW+ E+ K+I +V ++V R K NFVE++ KIVYRR
Sbjct: 3 IKFFLLVSRQGKVRLAKWFNTLSIKERAKIIRDVSSLVITRKPKMCNFVEYKGEKIVYRR 62
Query: 315 YAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 494
YA L+F ++ +DN L LE IH FVE L++YF NVCELDL+FNF K Y V++E+ LAG
Sbjct: 63 YASLFFVCGIEQDDNELIILEVIHKFVECLDKYFGNVCELDLIFNFEKAYYVMEELLLAG 122
Query: 495 EIRETSQTKVLKQLL 539
E++E+S+T VL +L
Sbjct: 123 ELQESSKTNVLSAVL 137
>SPAC30D11.05 |aps3||AP-3 adaptor complex subunit Aps3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 165
Score = 103 bits (246), Expect = 4e-23
Identities = 53/136 (38%), Positives = 81/136 (59%), Gaps = 4/136 (2%)
Frame = +3
Query: 132 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNF----K 299
MI + I N GK RL K+Y D+ +QKLI +++A V+ R NF+E +
Sbjct: 1 MIYAVFIFNNKGKPRLTKFYTPIDESIQQKLIGDIYAAVSTRPPTACNFLESNLIAGKNR 60
Query: 300 IVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDE 479
I+YR+YA LYF VD ++ L L+ I FVE L+ F+NVCELDLVF F +++ ++ E
Sbjct: 61 IIYRQYATLYFVFVVDEGESELGILDLIQVFVEALDRCFNNVCELDLVFKFQEIHAILAE 120
Query: 480 MFLAGEIRETSQTKVL 527
+ G + ET+ +++
Sbjct: 121 VVSGGLVLETNLNEIV 136
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 42.7 bits (96), Expect = 6e-05
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 1/127 (0%)
Frame = +3
Query: 132 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVH-AVVTVRDAKHTNFVEFRNFKIVY 308
MI + I N G T + K F D K+ + E A++T D +H V + +Y
Sbjct: 1 MISGLFIFNLKGDTLICK---TFRHDLKKSVTEIFRVAILTNTDYRHP-IVSIGSSTYIY 56
Query: 309 RRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFL 488
++ LY N N + LE + + ++ L YF + E + N ++ ++DEM
Sbjct: 57 TKHEDLYVVAITKGNPNVMIVLEFLESLIQDLTHYFGKLNENTVKDNVSFIFELLDEMID 116
Query: 489 AGEIRET 509
G I+ T
Sbjct: 117 YGIIQTT 123
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 35.5 bits (78), Expect = 0.009
Identities = 20/83 (24%), Positives = 41/83 (49%)
Frame = +3
Query: 303 VYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEM 482
+Y + +Y +N + + L + +V +YF + E + NF VY ++DE+
Sbjct: 58 IYIHHNDVYLLALSKMNSDAMEMLVFLRKMADVFIDYFKELQEESIRDNFVLVYELLDEI 117
Query: 483 FLAGEIRETSQTKVLKQLLMLNS 551
G +T++TK+L++ + S
Sbjct: 118 MDFG-FPQTTETKILQEYITQTS 139
>SPAC1805.05 |cki3||serine/threonine protein kinase
Cki3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 439
Score = 28.7 bits (61), Expect = 1.0
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -3
Query: 549 SSASRVV*AL*FGMSP*SHQPKTFRLQPYTLYKN*RPSPTRKHYG-NIHLGPRQS 388
S V+ A+ FGM+ PKT +PY +K+ S T ++ N HLG QS
Sbjct: 147 SKTENVIYAVDFGMAKQYRDPKTHVHRPYNEHKS--LSGTARYMSINTHLGREQS 199
>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 269
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +3
Query: 342 VDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFY-KVYTVVDEMF 485
++ +DN+L YL L YF + + V N K TV+D ++
Sbjct: 111 INASDNSLAYLSKPEESYNFLTIYFSTLLSYEKVENLIKKSLTVIDSLY 159
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 345 DVNDNNLCYLEAIHNFVEVLNEYFHNVCELD 437
D +DN+ C+ N + LN YF N ++D
Sbjct: 180 DKSDNSNCWRPIATNLLHRLNAYFQNEVKMD 210
>SPCC18B5.11c |cds1||replication checkpoint kinase
Cds1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 26.2 bits (55), Expect = 5.5
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +3
Query: 384 HNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLL 539
H V +E F N EL +V + + ++D + G I E +LKQLL
Sbjct: 228 HPGVVQCHEIFENDDELFIVMEYVEGGDLMDFLIANGSIDEQDCKPLLKQLL 279
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 26.2 bits (55), Expect = 5.5
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +2
Query: 122 KRENDKIHFDPEPSRQDSTCEMVYE 196
+ + ++H +PEP QDS E++ +
Sbjct: 35 QESSSEVHANPEPDNQDSNAEILID 59
>SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 25.8 bits (54), Expect = 7.3
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +3
Query: 168 KTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKH 269
K RL WY + ++ L+E+ A + + KH
Sbjct: 141 KRRLDAWYFGYIPPAQESLLEDFEAKIEEQQHKH 174
>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 25.8 bits (54), Expect = 7.3
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = -1
Query: 353 IYIDTYTEVQTCIPPVYYLEISELDKVRVFRVS---DGDDCMNFFYQLLFFVIIKIHIPF 183
+++D ++ C V Y + ++ +RV+ V+ D CM F +V+ + P+
Sbjct: 59 LFVDPLSDGDACSRDVPYFQELSVNAIRVYAVNASLDHSACMQAFQDAGIYVLSDLAQPY 118
Query: 182 RKSS 171
S
Sbjct: 119 EAIS 122
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/56 (21%), Positives = 26/56 (46%)
Frame = +3
Query: 147 LIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRR 314
L+ N GK + ++D + LIE+ + + + FVE+++ + R+
Sbjct: 651 LLLNEMGKLFQVELNFSYDSPDVNLLIEQFYEITSYESNYDDAFVEYKDATVANRK 706
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 25.4 bits (53), Expect = 9.7
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Frame = +3
Query: 246 VTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNF---VEVLNEYF 416
VTV + N F + + IC NDNNL L+ H ++VL +Y
Sbjct: 181 VTVHETGFGNIENLATFSTKFVALSSHKNYICGLTNDNNLYILQHSHQAGTKLKVLGKYH 240
Query: 417 HNVCELDLVFNFYKV---YTVVDEMF 485
+ E + +F + Y VV +F
Sbjct: 241 VSSIEKQVAIHFQQSKEGYEVVHVVF 266
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -2
Query: 406 FRTSTKLCMASR*HKLLSFTSTHIQKYRPAYLLYTIL 296
F+T+T+LC LSF+ H + + P++++ TIL
Sbjct: 80 FQTNTRLC--------LSFSDFHPKSWNPSWMVSTIL 108
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 71 GGVNPSLKVIFNKKAITKRENDKIHFD 151
GGV + V+ KK I K END+ + +
Sbjct: 334 GGVGSAFGVVGKKKQIYKGENDEFYVE 360
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 25.4 bits (53), Expect = 9.7
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
Frame = -2
Query: 577 KNNTNTYSKEFSIKSCLSTLVWDVSLISPAKNIXXXXXXXXXXXXXXSNSQT--LWKYSF 404
KN Y +EF ++ L+ + L PA S+T L Y+
Sbjct: 435 KNQFRVYLQEFDFEADKVNLISTIELELPATFDPTSLTVDEEYSNFLIGSRTGSLALYNI 494
Query: 403 RTSTKLCMASR*HKLLSFTSTHIQKYRPAYLL 308
S L + R H+ + +S HI+ + YLL
Sbjct: 495 GESNYLSVWRRIHEFDAISSIHIKSSKRDYLL 526
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 25.4 bits (53), Expect = 9.7
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 183 KWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLY 329
K +++ D KL+ E+H TVRD K F + F + ++Y +Y
Sbjct: 122 KGHISAFDWRTGKLLTELHLRETVRDVKW--FHNHQYFAVAQKKYVYVY 168
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,137,201
Number of Sequences: 5004
Number of extensions: 65201
Number of successful extensions: 204
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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