Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_B10
         (812 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45476| Best HMM Match : Clat_adaptor_s (HMM E-Value=0)             280   8e-76
SB_46459| Best HMM Match : No HMM Matches (HMM E-Value=.)              93   2e-19
SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.16 
SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44)     33   0.21 
SB_19443| Best HMM Match : Adap_comp_sub (HMM E-Value=2.2e-20)         31   1.1  
SB_45628| Best HMM Match : DUF1639 (HMM E-Value=0.19)                  31   1.1  
SB_52625| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_29342| Best HMM Match : SHD1 (HMM E-Value=2.8)                      30   1.9  
SB_39200| Best HMM Match : SHD1 (HMM E-Value=4)                        30   2.6  
SB_25465| Best HMM Match : SHD1 (HMM E-Value=4)                        30   2.6  
SB_8207| Best HMM Match : SHD1 (HMM E-Value=4)                         30   2.6  
SB_7712| Best HMM Match : RVT_1 (HMM E-Value=9.7e-28)                  30   2.6  
SB_47188| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_46747| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_42622| Best HMM Match : Gal-bind_lectin (HMM E-Value=9.1)           30   2.6  
SB_32319| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_22770| Best HMM Match : DUF1130 (HMM E-Value=9.6)                   30   2.6  
SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38)             29   3.4  
SB_5534| Best HMM Match : Peptidase_C48 (HMM E-Value=0.00016)          28   7.8  

>SB_45476| Best HMM Match : Clat_adaptor_s (HMM E-Value=0)
          Length = 141

 Score =  280 bits (687), Expect = 8e-76
 Identities = 130/141 (92%), Positives = 136/141 (96%)
 Frame = +3

Query: 135 IRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRR 314
           IRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHA+VTVRDAKHTNFVEFRNFKIVYRR
Sbjct: 1   IRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHALVTVRDAKHTNFVEFRNFKIVYRR 60

Query: 315 YAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 494
           YAGLYFC CVDV+DNNL YLEAIHNFVEVLNE+FHNVCELDLVFNFYKVY+VVDEMFLAG
Sbjct: 61  YAGLYFCFCVDVSDNNLYYLEAIHNFVEVLNEFFHNVCELDLVFNFYKVYSVVDEMFLAG 120

Query: 495 EIRETSQTKVLKQLLMLNSLE 557
           E+RETSQ+KVLKQL ML  LE
Sbjct: 121 ELRETSQSKVLKQLNMLQQLE 141


>SB_46459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 93.5 bits (222), Expect = 2e-19
 Identities = 48/121 (39%), Positives = 76/121 (62%), Gaps = 6/121 (4%)
 Frame = +3

Query: 213 KQKLIEEVHAVVTVRDAKHTNFVEF------RNFKIVYRRYAGLYFCICVDVNDNNLCYL 374
           +Q++I+E   +V+ RD    NF+E        +FK+VYR YA LYF  CVD +++ L  L
Sbjct: 2   QQQIIKETFHLVSRRDDNVCNFLEGGSLIGGADFKLVYRHYATLYFVFCVDSSESELGIL 61

Query: 375 EAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLNSL 554
           + I  FVE L++ F NVCELDL+F+  KV+ ++ E+ + G + ET+ +++L  +   N L
Sbjct: 62  DLIQVFVETLDKCFENVCELDLIFHMDKVHHILAEIVMGGMVLETNMSEILTHIEAQNKL 121

Query: 555 E 557
           E
Sbjct: 122 E 122


>SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1378

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 29/137 (21%), Positives = 59/137 (43%), Gaps = 1/137 (0%)
 Frame = +3

Query: 150 IQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDA-KHTNFVEFRNFKIVYRRYAGL 326
           I  + GK  +++ ++       + L+     ++T   + K   FVE  + + VY+    L
Sbjct: 476 ICTKNGKAIISRQFVEMTRSRIEGLLSAFPKLMTSGSSVKQHTFVETESVRYVYQPLEKL 535

Query: 327 YFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRE 506
           Y  +    + N L  LE +  F  V+ EY   + E ++  + +++    DE+   G  RE
Sbjct: 536 YMLLITTKHSNILEDLETLRLFSRVIPEYCRAMEESEIGEHAFELIFAFDEIVALG-YRE 594

Query: 507 TSQTKVLKQLLMLNSLE 557
                 ++    ++S E
Sbjct: 595 NVNLAQIRTFTEMDSHE 611


>SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44)
          Length = 331

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 1/137 (0%)
 Frame = +3

Query: 132 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHA-VVTVRDAKHTNFVEFRNFKIVY 308
           MI    I N  G+  +++ Y    DD  +  ++     V+  R    +           +
Sbjct: 1   MIGGFFIYNHKGEVLISRVYR---DDIGRNTVDAFRVNVIHARGQIRSPVTNIARTSFFH 57

Query: 309 RRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFL 488
            R   ++       N N     E +   V+++  YF  V E  +  NF  +Y ++DE+  
Sbjct: 58  IRQGNVWIAAVTRQNVNAAMVFEFLFRTVDIMMSYFGKVTEEGIKNNFVLIYELLDEIAD 117

Query: 489 AGEIRETSQTKVLKQLL 539
            G  ++T  T +LK  +
Sbjct: 118 YGYPQKT-DTAILKTFI 133


>SB_19443| Best HMM Match : Adap_comp_sub (HMM E-Value=2.2e-20)
          Length = 216

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = +3

Query: 336 ICVDVNDNNLCYLEA-IHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETS 512
           +C    + N+  +   +H  V V  +YF  + E  +  NF  +Y ++DE+   G   + +
Sbjct: 13  VCTTKKNANVALIFVFLHRMVHVFIDYFKELEEESIRDNFVIIYELMDELVDFG-YPQFT 71

Query: 513 QTKVLKQLL 539
           +TK+L++ +
Sbjct: 72  ETKILQEYI 80


>SB_45628| Best HMM Match : DUF1639 (HMM E-Value=0.19)
          Length = 662

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +3

Query: 165 GKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGL 326
           G   +A+ Y +  D E ++ I   ++ +T RD K       RN  I+YR Y G+
Sbjct: 543 GVQAIAEQYNSETDSETEEEIPIQYSAITGRDPKKAYKERERNIWIMYRAYRGM 596


>SB_52625| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 192 MNFDDDEKQKLIEEVHAVVTVRDAKHTNFVE-FRNFKIVY 308
           M F+D E+Q  + E+H   + RD +  N +  FR FK+VY
Sbjct: 120 MRFEDIERQMWLSEIHN-DSRRDPRQKNKLRTFRTFKVVY 158


>SB_29342| Best HMM Match : SHD1 (HMM E-Value=2.8)
          Length = 310

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 192 MNFDDDEKQKLIEEVHAVVTVRDAKHTNFVE-FRNFKIVY 308
           M F+D E+Q  + E+H   + RD +  N +  FR FK+VY
Sbjct: 199 MRFEDIERQVWLSEIHN-DSRRDPRQNNKLRTFRTFKVVY 237


>SB_39200| Best HMM Match : SHD1 (HMM E-Value=4)
          Length = 211

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 192 MNFDDDEKQKLIEEVHAVVTVRDAKHTNFVE-FRNFKIVY 308
           M F+D E+Q  + E+H   + RD +  N +  FR FK+VY
Sbjct: 120 MRFEDIERQVWLSEIHN-DSRRDPRQKNKLRTFRTFKVVY 158


>SB_25465| Best HMM Match : SHD1 (HMM E-Value=4)
          Length = 147

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 192 MNFDDDEKQKLIEEVHAVVTVRDAKHTNFVE-FRNFKIVY 308
           M F+D E+Q  + E+H   + RD +  N +  FR FK+VY
Sbjct: 56  MRFEDIERQVWLSEIHN-DSRRDPRQKNKLRTFRTFKVVY 94


>SB_8207| Best HMM Match : SHD1 (HMM E-Value=4)
          Length = 208

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 192 MNFDDDEKQKLIEEVHAVVTVRDAKHTNFVE-FRNFKIVY 308
           M F+D E+Q  + E+H   + RD +  N +  FR FK+VY
Sbjct: 41  MRFEDIERQVWLSEIHN-DSRRDPRQKNKLRTFRTFKVVY 79


>SB_7712| Best HMM Match : RVT_1 (HMM E-Value=9.7e-28)
          Length = 478

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 192 MNFDDDEKQKLIEEVHAVVTVRDAKHTNFVE-FRNFKIVY 308
           M F+D E+Q  + E+H   + RD +  N +  FR FK+VY
Sbjct: 120 MRFEDIERQVWLSEIHN-DSRRDPRQKNKLRTFRTFKVVY 158


>SB_47188| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 270

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 192 MNFDDDEKQKLIEEVHAVVTVRDAKHTNFVE-FRNFKIVY 308
           M F+D E+Q  + E+H   + RD +  N +  FR FK+VY
Sbjct: 199 MRFEDIERQVWLSEIHN-DSRRDPRQKNKLRTFRTFKVVY 237


>SB_46747| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 576

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 192 MNFDDDEKQKLIEEVHAVVTVRDAKHTNFVE-FRNFKIVY 308
           M F+D E+Q  + E+H   + RD +  N +  FR FK+VY
Sbjct: 409 MRFEDIERQVWLSEIHN-DSRRDPRQKNKLRTFRTFKVVY 447


>SB_42622| Best HMM Match : Gal-bind_lectin (HMM E-Value=9.1)
          Length = 112

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 192 MNFDDDEKQKLIEEVHAVVTVRDAKHTNFVE-FRNFKIVY 308
           M F+D E+Q  + E+H   + RD +  N +  FR FK+VY
Sbjct: 41  MRFEDIERQVWLSEIHN-DSRRDPRQKNKLRTFRTFKVVY 79


>SB_32319| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 551

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 192 MNFDDDEKQKLIEEVHAVVTVRDAKHTNFVE-FRNFKIVY 308
           M F+D E+Q  + E+H   + RD +  N +  FR FK+VY
Sbjct: 384 MRFEDIERQVWLSEIHN-DSRRDPRQKNKLRTFRTFKVVY 422


>SB_22770| Best HMM Match : DUF1130 (HMM E-Value=9.6)
          Length = 217

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 192 MNFDDDEKQKLIEEVHAVVTVRDAKHTNFVE-FRNFKIVY 308
           M F+D E+Q  + E+H   + RD +  N +  FR FK+VY
Sbjct: 146 MRFEDIERQVWLSEIHN-DSRRDPRQKNKLRTFRTFKVVY 184


>SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38)
          Length = 451

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +3

Query: 192 MNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDVND 356
           MN    +  KLIEE+    T+ + ++    + RN+++ Y +   L F   + ++D
Sbjct: 374 MNMSKAQVAKLIEELVPDCTITNTENGEDKDKRNYEVSYNKIRNLGFKATISIDD 428


>SB_5534| Best HMM Match : Peptidase_C48 (HMM E-Value=0.00016)
          Length = 313

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 577 KNNTNTYSKEFSIKSCLSTLVW 512
           KNN   +  EF    C STLVW
Sbjct: 48  KNNLKEHCTEFECNPCTSTLVW 69


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,208,932
Number of Sequences: 59808
Number of extensions: 440998
Number of successful extensions: 959
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)