Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_B10
(812 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chai... 290 7e-79
AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, smal... 151 8e-37
AC025721-3|AAM15614.1| 192|Caenorhabditis elegans Adaptin, smal... 110 1e-24
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 44 2e-04
Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical pr... 43 2e-04
L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein ( Caeno... 43 2e-04
U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical pr... 36 0.034
AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : short... 35 0.060
AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : short... 35 0.060
L26290-1|AAA27981.1| 441|Caenorhabditis elegans clathrin-associ... 33 0.32
Z78416-2|CAB01677.2| 583|Caenorhabditis elegans Hypothetical pr... 29 3.0
U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/med... 29 5.2
Z92782-4|CAB07186.1| 367|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z70035-3|CAA93863.1| 435|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z83127-6|CAB05633.1| 327|Caenorhabditis elegans Hypothetical pr... 28 9.1
Z82070-9|CAB04916.4| 222|Caenorhabditis elegans Hypothetical pr... 28 9.1
Z80214-6|CAB02266.1| 327|Caenorhabditis elegans Hypothetical pr... 28 9.1
AL132872-4|CAJ76957.2| 222|Caenorhabditis elegans Hypothetical ... 28 9.1
AL032634-2|CAC35855.1| 276|Caenorhabditis elegans Hypothetical ... 28 9.1
AF040647-4|AAY55829.1| 152|Caenorhabditis elegans Hypothetical ... 28 9.1
AC084159-12|ABO16466.1| 377|Caenorhabditis elegans F-box a prot... 28 9.1
>U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chain
(clathrin associatedcomplex) protein 2 protein.
Length = 142
Score = 290 bits (712), Expect = 7e-79
Identities = 136/142 (95%), Positives = 138/142 (97%)
Frame = +3
Query: 132 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYR 311
MIRFILIQNRAGKTRLAKWYM+FDDDEKQKLIEEVHA VTVRDAKHTNFVEFRNFKIVYR
Sbjct: 1 MIRFILIQNRAGKTRLAKWYMHFDDDEKQKLIEEVHACVTVRDAKHTNFVEFRNFKIVYR 60
Query: 312 RYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 491
RYAGLYFCICVD+ DNNL YLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA
Sbjct: 61 RYAGLYFCICVDITDNNLYYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120
Query: 492 GEIRETSQTKVLKQLLMLNSLE 557
GEIRETSQTKVLKQLLML SLE
Sbjct: 121 GEIRETSQTKVLKQLLMLTSLE 142
>AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, small
chain (clathrinassociated complex) protein 1 protein.
Length = 157
Score = 151 bits (365), Expect = 8e-37
Identities = 64/135 (47%), Positives = 97/135 (71%)
Frame = +3
Query: 132 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIVYR 311
M++++L+ +R GK RL KWY + D +K+K+ E+ + R K F+E+++ K+VY+
Sbjct: 1 MMQYMLLFSRQGKLRLQKWYTAYPDKQKKKICRELITQILARKPKMCAFLEYKDLKVVYK 60
Query: 312 RYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 491
RYA LYFC ++ NDN L LE IH +VE+L++YF +VCELD++FNF K Y ++DE LA
Sbjct: 61 RYASLYFCCAIEQNDNELITLEVIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLA 120
Query: 492 GEIRETSQTKVLKQL 536
GEI+ETS+ +VLK +
Sbjct: 121 GEIQETSKKQVLKAI 135
>AC025721-3|AAM15614.1| 192|Caenorhabditis elegans Adaptin, small
chain (clathrinassociated complex) protein 3 protein.
Length = 192
Score = 110 bits (265), Expect = 1e-24
Identities = 51/141 (36%), Positives = 91/141 (64%), Gaps = 6/141 (4%)
Frame = +3
Query: 132 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEF------RN 293
MI+ IL+ N GK RL K+Y ++ ++++Q+++ E +V+ RD NF+E +
Sbjct: 1 MIKAILVINNHGKPRLLKFYQHYPEEKQQQIVRETFQLVSKRDDNVCNFLEGGTLIDGND 60
Query: 294 FKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVV 473
++++YR YA LYF CVD +++ L L+ I FVE L+ F NVCELDL+F+ +V+ ++
Sbjct: 61 YRLIYRHYATLYFIFCVDSSESELGILDLIQVFVETLDRCFENVCELDLIFHVDRVHHIL 120
Query: 474 DEMFLAGEIRETSQTKVLKQL 536
E+ + G + ET+ ++L+++
Sbjct: 121 GEIVMGGMVLETNMNEILQRI 141
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin,
mu/medium chain (clathrinassociated complex) protein 1
protein.
Length = 426
Score = 43.6 bits (98), Expect = 2e-04
Identities = 24/78 (30%), Positives = 41/78 (52%)
Frame = +3
Query: 306 YRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMF 485
Y +Y +Y N N + L A++ VEV EYF + E + NF +Y + DEM
Sbjct: 59 YIKYMNVYLVTISKKNTNVILVLSALYKIVEVFCEYFKTLEEEAVRDNFVIIYELFDEML 118
Query: 486 LAGEIRETSQTKVLKQLL 539
G +T+++K+L++ +
Sbjct: 119 DFG-YPQTTESKILQEFI 135
>Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical
protein K11D2.3a protein.
Length = 422
Score = 43.2 bits (97), Expect = 2e-04
Identities = 29/133 (21%), Positives = 66/133 (49%), Gaps = 1/133 (0%)
Frame = +3
Query: 144 ILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRD-AKHTNFVEFRNFKIVYRRYA 320
+ I + GKT +++ Y D + + + +H ++ + + +++ V+ ++
Sbjct: 6 MFILDLKGKTIISRNYRG--DIDMTAIDKFIHLLMEKEEEGSAAPVLTYQDTNFVFIKHT 63
Query: 321 GLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEI 500
+Y N N L ++ VEV +EYF +V E + NF +Y ++DEM G
Sbjct: 64 NIYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDNFVVIYELLDEMMDFG-F 122
Query: 501 RETSQTKVLKQLL 539
+T+++++L++ +
Sbjct: 123 PQTTESRILQEYI 135
>L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein (
Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
Length = 422
Score = 43.2 bits (97), Expect = 2e-04
Identities = 29/133 (21%), Positives = 66/133 (49%), Gaps = 1/133 (0%)
Frame = +3
Query: 144 ILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRD-AKHTNFVEFRNFKIVYRRYA 320
+ I + GKT +++ Y D + + + +H ++ + + +++ V+ ++
Sbjct: 6 MFILDLKGKTIISRNYRG--DIDMTAIDKFIHLLMEKEEEGSAAPVLTYQDTNFVFIKHT 63
Query: 321 GLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEI 500
+Y N N L ++ VEV +EYF +V E + NF +Y ++DEM G
Sbjct: 64 NIYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDNFVVIYELLDEMMDFG-F 122
Query: 501 RETSQTKVLKQLL 539
+T+++++L++ +
Sbjct: 123 PQTTESRILQEYI 135
>U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical
protein C13B9.3 protein.
Length = 515
Score = 35.9 bits (79), Expect = 0.034
Identities = 26/98 (26%), Positives = 46/98 (46%)
Frame = +3
Query: 264 KHTNFVEFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLV 443
+HT FVE + + VY +Y + N N L LE + FV V+ EY + E +++
Sbjct: 51 QHT-FVETDSVRYVYHPLDNIYLVLVTTKNSNILEDLETLRLFVRVIPEYCRSNEEKEIL 109
Query: 444 FNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLNSLE 557
+ + + DE+ G RE+ ++ ++S E
Sbjct: 110 AHDFDLIFAFDEVVTLG-YRESVNLAQIRTFTEMDSHE 146
>AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform b protein.
Length = 435
Score = 35.1 bits (77), Expect = 0.060
Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 1/127 (0%)
Frame = +3
Query: 132 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHA-VVTVRDAKHTNFVEFRNFKIVY 308
MI + + N G+ +++ Y DD + ++ V+ R + +
Sbjct: 1 MIGGLFVYNHKGEVLISRIYR---DDVTRNAVDAFRVNVIHARQQVRSPVTNMARTSFFH 57
Query: 309 RRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFL 488
+ ++ C N N E + F + + YF + E ++ NF +Y ++DE+
Sbjct: 58 VKRGNVWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILD 117
Query: 489 AGEIRET 509
G + T
Sbjct: 118 FGYPQNT 124
>AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform a protein.
Length = 441
Score = 35.1 bits (77), Expect = 0.060
Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 1/127 (0%)
Frame = +3
Query: 132 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHA-VVTVRDAKHTNFVEFRNFKIVY 308
MI + + N G+ +++ Y DD + ++ V+ R + +
Sbjct: 1 MIGGLFVYNHKGEVLISRIYR---DDVTRNAVDAFRVNVIHARQQVRSPVTNMARTSFFH 57
Query: 309 RRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFL 488
+ ++ C N N E + F + + YF + E ++ NF +Y ++DE+
Sbjct: 58 VKRGNVWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILD 117
Query: 489 AGEIRET 509
G + T
Sbjct: 118 FGYPQNT 124
>L26290-1|AAA27981.1| 441|Caenorhabditis elegans
clathrin-associated protein homologueprotein.
Length = 441
Score = 32.7 bits (71), Expect = 0.32
Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 1/127 (0%)
Frame = +3
Query: 132 MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHA-VVTVRDAKHTNFVEFRNFKIVY 308
MI + + N G+ +++ Y DD + ++ V+ R + +
Sbjct: 1 MIGGLFVYNHKGEVLISRIYR---DDVTRNAVDAFRVNVIHARQQVRSPVTNMARTSFFH 57
Query: 309 RRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFL 488
+ ++ C N N + F + + YF + E ++ NF +Y ++DE+
Sbjct: 58 VKRGNVWICAVTRQNVNAAMVFAFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILD 117
Query: 489 AGEIRET 509
G + T
Sbjct: 118 FGYPQNT 124
>Z78416-2|CAB01677.2| 583|Caenorhabditis elegans Hypothetical
protein C23H4.2 protein.
Length = 583
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 189 YMNFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFR-NFKIVYRRYAGLYFCIC 341
Y NFD +QKL++ H ++ D + FR + I+Y+ + L +C
Sbjct: 512 YQNFDAKNQQKLVDSTHFIINTTD----QAIIFRTDISILYQWWFYLIIAVC 559
>U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/medium
chain (clathrinassociated complex) protein 3 protein.
Length = 414
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/53 (22%), Positives = 24/53 (45%)
Frame = +3
Query: 324 LYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEM 482
L+ + V L +E +H ++ +YF + + N V+ ++DEM
Sbjct: 64 LFLVAVITVETPPLMVIEFLHRVIQTFTQYFDEFSDSSMKENCVMVFELLDEM 116
>Z92782-4|CAB07186.1| 367|Caenorhabditis elegans Hypothetical
protein F14F8.5 protein.
Length = 367
Score = 28.3 bits (60), Expect = 6.9
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Frame = -1
Query: 422 IMEIFI*DLDKVMYGL-EITQIVIIYIDTYTEVQTCIPPVYYLEISELDKVRVFRVSDGD 246
++ I I DL ++++ + I+ I+ I ++ TCIPP+ YLE+ + + D
Sbjct: 62 LIGIAICDLFRMIFTIVTISPIIYREILSFCIPVTCIPPLSYLEMYFIQLFNSLEIILTD 121
Query: 245 DCMNFFYQLLFFVIIKIHIPFRK--SSLACS 159
+ F + F + I P K SSL S
Sbjct: 122 LSVWFVVFMTIFRALVIRYPLNKRISSLVTS 152
>Z70035-3|CAA93863.1| 435|Caenorhabditis elegans Hypothetical
protein R09D1.3 protein.
Length = 435
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 168 KTRLAKWYMNFD--DDEKQKLIEEVHAVVTVRDAKHTNFVEFRN 293
K R+ +Y +D D K +L + HAV D K+ ++F+N
Sbjct: 75 KRRIVGYYSEYDSTDISKNQLAKLTHAVFAFVDIKYDGTLQFKN 118
>Z83127-6|CAB05633.1| 327|Caenorhabditis elegans Hypothetical
protein C27D8.1 protein.
Length = 327
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -1
Query: 248 DDCMNFFYQLLFFVIIKIHIPFRKSSLACSVLDQNE 141
DDC ++FY LL +I+ +P+RK S VL + E
Sbjct: 213 DDCESWFY-LLLDLIVPSGLPWRKLSDKHEVLKEKE 247
>Z82070-9|CAB04916.4| 222|Caenorhabditis elegans Hypothetical
protein W04E12.7 protein.
Length = 222
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +3
Query: 189 YMNFDDDEKQK-LIEEVHAVVTVRD 260
Y NF+DD+ ++ +IE H VVTV D
Sbjct: 20 YPNFEDDDMERYVIENSHDVVTVFD 44
>Z80214-6|CAB02266.1| 327|Caenorhabditis elegans Hypothetical
protein C27D8.1 protein.
Length = 327
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -1
Query: 248 DDCMNFFYQLLFFVIIKIHIPFRKSSLACSVLDQNE 141
DDC ++FY LL +I+ +P+RK S VL + E
Sbjct: 213 DDCESWFY-LLLDLIVPSGLPWRKLSDKHEVLKEKE 247
>AL132872-4|CAJ76957.2| 222|Caenorhabditis elegans Hypothetical
protein W04E12.7 protein.
Length = 222
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +3
Query: 189 YMNFDDDEKQK-LIEEVHAVVTVRD 260
Y NF+DD+ ++ +IE H VVTV D
Sbjct: 20 YPNFEDDDMERYVIENSHDVVTVFD 44
>AL032634-2|CAC35855.1| 276|Caenorhabditis elegans Hypothetical
protein Y39G8C.2 protein.
Length = 276
Score = 27.9 bits (59), Expect = 9.1
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Frame = -1
Query: 350 YIDTYTEVQTCIPPVYY---LEISELDKVRVFRVSDGDDCMNFFYQLLFFVIIKIHIPFR 180
Y++T E++T V + + + L R + DDC ++FY LL +I+ +P+R
Sbjct: 176 YLNTKNELKTPREAVGFKGTVRFAPLACHRFTELGPRDDCESWFY-LLLDLILPRGLPWR 234
Query: 179 KSSLACSVLDQNE 141
K + VL + E
Sbjct: 235 KMNEKGEVLKEKE 247
>AF040647-4|AAY55829.1| 152|Caenorhabditis elegans Hypothetical
protein F54D12.10 protein.
Length = 152
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 333 CICVDVNDNNLCYLEAIHNFVEVLNE 410
CI V N N CYL A+ + ++V N+
Sbjct: 56 CILVHSNSLNRCYLYAVGDIIQVRND 81
>AC084159-12|ABO16466.1| 377|Caenorhabditis elegans F-box a protein
protein 222 protein.
Length = 377
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 237 HAVVTVRDAKHTNFVEFRNFKIVYRRYAG 323
H+ V+ R + F+EF +IVYR + G
Sbjct: 114 HSAVSFRMCRDWTFLEFSKHEIVYREFEG 142
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,189,380
Number of Sequences: 27780
Number of extensions: 365384
Number of successful extensions: 1105
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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