Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_B08
         (724 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-2760|AAN13821.2|  330|Drosophila melanogaster CG4390-PB...   221   6e-58
AY118729-1|AAM50589.1|  286|Drosophila melanogaster GH03475p pro...   219   2e-57
AE014297-2761|AAF55741.1|  286|Drosophila melanogaster CG4390-PA...   219   2e-57
AY051575-1|AAK92999.1|  560|Drosophila melanogaster GH22314p pro...    31   1.6  
U73846-1|AAB61993.1|  808|Drosophila melanogaster testis-specifi...    29   8.5  
AY069549-1|AAL39694.1|  434|Drosophila melanogaster LD27553p pro...    29   8.5  
AF017096-1|AAC39085.1|  347|Drosophila melanogaster protein ( Dr...    29   8.5  
AE014297-671|AAF54165.2|  434|Drosophila melanogaster CG2678-PA ...    29   8.5  

>AE014297-2760|AAN13821.2|  330|Drosophila melanogaster CG4390-PB,
           isoform B protein.
          Length = 330

 Score =  221 bits (541), Expect = 6e-58
 Identities = 111/231 (48%), Positives = 148/231 (64%), Gaps = 1/231 (0%)
 Frame = +3

Query: 33  GRQTEIXAVVN-SGYKXIVNIIFPEAHQKSNMDSLQLESSNKIFGGYQKVYSHASSELKC 209
           GR + + ++V  S      +I+    H  +   +L+  S+NK F G Q+VY H S  LKC
Sbjct: 13  GRSSFVYSIVACSNLPKRRSIVLSFGHIMTENMTLEQLSANKCFEGEQRVYRHRSDTLKC 72

Query: 210 KMNFSIYLPPQAEGGDVKLPLLYYLSGLTCSEQNFITKSGFQRYAAEHGVIVVGPDTSPR 389
            M F ++LPP A  G    P+L++LSGLTC+ +NFI KSGFQ++AA H +IVV PDTSPR
Sbjct: 73  DMTFGVFLPPAALEGK-PCPVLFFLSGLTCTHENFIQKSGFQQHAARHNLIVVNPDTSPR 131

Query: 390 GVKIDGDDSSWDFGVSAGFYLDATNEPWNNNYRMGSYLNVELYDLILKAFCNVVDPNRXX 569
           GV+I G D ++DFG  AGFY+DA  EPW+ +Y+M SY+  EL D ++ A   VV P +  
Sbjct: 132 GVEIAGQDDAYDFGSGAGFYVDAKEEPWSKHYKMYSYVTQELVD-VVNANLPVV-PGKRG 189

Query: 570 XXXXXXXXXXALVSTLRNPGQYKSVSAFAPICNPSACPWGVKAFXGYLGED 722
                     AL+  L+NPG Y+SVSAFAPI NP+ CPWG KAF GYLG +
Sbjct: 190 IFGHSMGGHGALICALKNPGLYQSVSAFAPIANPTECPWGKKAFAGYLGSN 240


>AY118729-1|AAM50589.1|  286|Drosophila melanogaster GH03475p
           protein.
          Length = 286

 Score =  219 bits (536), Expect = 2e-57
 Identities = 105/198 (53%), Positives = 135/198 (68%)
 Frame = +3

Query: 129 SLQLESSNKIFGGYQKVYSHASSELKCKMNFSIYLPPQAEGGDVKLPLLYYLSGLTCSEQ 308
           +L+  S+NK F G Q+VY H S  LKC M F ++LPP A  G    P+L++LSGLTC+ +
Sbjct: 2   TLEQLSANKCFEGEQRVYRHRSDTLKCDMTFGVFLPPAALEGK-PCPVLFFLSGLTCTHE 60

Query: 309 NFITKSGFQRYAAEHGVIVVGPDTSPRGVKIDGDDSSWDFGVSAGFYLDATNEPWNNNYR 488
           NFI KSGFQ++AA H +IVV PDTSPRGV+I G D ++DFG  AGFY+DA  EPW+ +Y+
Sbjct: 61  NFIQKSGFQQHAARHNLIVVNPDTSPRGVEIAGQDDAYDFGSGAGFYVDAKEEPWSKHYK 120

Query: 489 MGSYLNVELYDLILKAFCNVVDPNRXXXXXXXXXXXXALVSTLRNPGQYKSVSAFAPICN 668
           M SY+  EL D ++ A   VV P +            AL+  L+NPG Y+SVSAFAPI N
Sbjct: 121 MYSYVTQELVD-VVNANLPVV-PGKRGIFGHSMGGHGALICALKNPGLYQSVSAFAPIAN 178

Query: 669 PSACPWGVKAFXGYLGED 722
           P+ CPWG KAF GYLG +
Sbjct: 179 PTECPWGKKAFAGYLGSN 196


>AE014297-2761|AAF55741.1|  286|Drosophila melanogaster CG4390-PA,
           isoform A protein.
          Length = 286

 Score =  219 bits (536), Expect = 2e-57
 Identities = 105/198 (53%), Positives = 135/198 (68%)
 Frame = +3

Query: 129 SLQLESSNKIFGGYQKVYSHASSELKCKMNFSIYLPPQAEGGDVKLPLLYYLSGLTCSEQ 308
           +L+  S+NK F G Q+VY H S  LKC M F ++LPP A  G    P+L++LSGLTC+ +
Sbjct: 2   TLEQLSANKCFEGEQRVYRHRSDTLKCDMTFGVFLPPAALEGK-PCPVLFFLSGLTCTHE 60

Query: 309 NFITKSGFQRYAAEHGVIVVGPDTSPRGVKIDGDDSSWDFGVSAGFYLDATNEPWNNNYR 488
           NFI KSGFQ++AA H +IVV PDTSPRGV+I G D ++DFG  AGFY+DA  EPW+ +Y+
Sbjct: 61  NFIQKSGFQQHAARHNLIVVNPDTSPRGVEIAGQDDAYDFGSGAGFYVDAKEEPWSKHYK 120

Query: 489 MGSYLNVELYDLILKAFCNVVDPNRXXXXXXXXXXXXALVSTLRNPGQYKSVSAFAPICN 668
           M SY+  EL D ++ A   VV P +            AL+  L+NPG Y+SVSAFAPI N
Sbjct: 121 MYSYVTQELVD-VVNANLPVV-PGKRGIFGHSMGGHGALICALKNPGLYQSVSAFAPIAN 178

Query: 669 PSACPWGVKAFXGYLGED 722
           P+ CPWG KAF GYLG +
Sbjct: 179 PTECPWGKKAFAGYLGSN 196


>AY051575-1|AAK92999.1|  560|Drosophila melanogaster GH22314p
           protein.
          Length = 560

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -2

Query: 300 YKLDQTNNIEVVIS-HHPLLPEGGDR*KNSFCILIQMMHENTLFDNHQKFYWTILI 136
           Y+  QT  + V +   HPLL  GGD  ++ +      + + + F+  +KF + IL+
Sbjct: 427 YQQQQTTQLPVQLQLQHPLLQTGGDGKQSVYAPPTVQLRKQSRFNARKKFQFAILV 482


>U73846-1|AAB61993.1|  808|Drosophila melanogaster testis-specific
           RNP-type RNA bindingprotein protein.
          Length = 808

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -2

Query: 447 KNRH*LQNPMMNHLHQS*LHVAKYQDLRQLHHVRLH 340
           K+ H LQ+   +H HQ   H A +Q  +QLHH + H
Sbjct: 95  KSSHSLQHHHSHH-HQLQRHTALHQQQQQLHHHQPH 129


>AY069549-1|AAL39694.1|  434|Drosophila melanogaster LD27553p
           protein.
          Length = 434

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
 Frame = -2

Query: 561 Y*DLPHCKK----PSKLN-HIIQHSNNCPFCNYYSMVHLWHLNKNRH*LQNPMMNHLHQS 397
           Y + PHC K     ++L  HI    N CP+C      ++   N  RH L+N +    H+ 
Sbjct: 196 YYNCPHCSKRFCSQTQLRTHITDLCNRCPYC---PRTYMQKSNLKRH-LRNHLSKPAHKC 251

Query: 396 *LHVAKYQDLRQLH---HVRLHTS 334
             H +K   +R+ H   H+R H S
Sbjct: 252 -FHCSK-AFMRKDHLKRHLRTHDS 273


>AF017096-1|AAC39085.1|  347|Drosophila melanogaster protein (
           Drosophila melanogasterprophosphoribosylamidotransferase
           (Prat) gene, completecds. ).
          Length = 347

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
 Frame = -2

Query: 561 Y*DLPHCKK----PSKLN-HIIQHSNNCPFCNYYSMVHLWHLNKNRH*LQNPMMNHLHQS 397
           Y + PHC K     ++L  HI    N CP+C      ++   N  RH L+N +    H+ 
Sbjct: 197 YYNCPHCSKRFCSQTQLRTHITDLCNRCPYC---PRTYMQKSNLKRH-LRNHLSKPAHKC 252

Query: 396 *LHVAKYQDLRQLH---HVRLHTS 334
             H +K   +R+ H   H+R H S
Sbjct: 253 -FHCSK-AFMRKDHLKRHLRTHDS 274


>AE014297-671|AAF54165.2|  434|Drosophila melanogaster CG2678-PA
           protein.
          Length = 434

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
 Frame = -2

Query: 561 Y*DLPHCKK----PSKLN-HIIQHSNNCPFCNYYSMVHLWHLNKNRH*LQNPMMNHLHQS 397
           Y + PHC K     ++L  HI    N CP+C      ++   N  RH L+N +    H+ 
Sbjct: 196 YYNCPHCSKRFCSQTQLRTHITDLCNRCPYC---PRTYMQKSNLKRH-LRNHLSKPAHKC 251

Query: 396 *LHVAKYQDLRQLH---HVRLHTS 334
             H +K   +R+ H   H+R H S
Sbjct: 252 -FHCSK-AFMRKDHLKRHLRTHDS 273


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,064,817
Number of Sequences: 53049
Number of extensions: 748290
Number of successful extensions: 1445
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1439
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3231892257
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)