Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_B05
         (765 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81525-7|CAE17780.1|  263|Caenorhabditis elegans Hypothetical pr...    28   8.4  
Z68749-2|CAA92961.1|  260|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>Z81525-7|CAE17780.1|  263|Caenorhabditis elegans Hypothetical
           protein F33A8.10 protein.
          Length = 263

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +3

Query: 459 PLVTLKSYYKLISENQPYNVDLNLYLLRY-YI-SVSFQISNIMNQENLLASIN 611
           P +  +SY   +S NQPY    N+Y  RY Y+ +   Q+   MN  N +   N
Sbjct: 15  PTIICQSYTFPLSPNQPYPQYNNVYESRYPYLQNQQIQMQPQMNNMNHIGGFN 67


>Z68749-2|CAA92961.1|  260|Caenorhabditis elegans Hypothetical
           protein F56H11.6 protein.
          Length = 260

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 431 INWNYKFVHYYDCILYFYNHKFRQDYIIKN-INKGKQY 321
           IN   K  HYYD   Y   H F +D +IK+ +N G  Y
Sbjct: 115 INKMLKECHYYDHPNYDLVHSFFKDVMIKSEVNWGSAY 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,508,070
Number of Sequences: 27780
Number of extensions: 250203
Number of successful extensions: 476
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)