Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_B04
(779 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 337 5e-93
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 60 3e-09
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-09
SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10) 51 1e-06
SB_19388| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 31 0.79
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 31 0.79
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72) 29 5.6
SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_25617| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_24314| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_3140| Best HMM Match : C1_3 (HMM E-Value=7) 28 9.8
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 337 bits (829), Expect = 5e-93
Identities = 166/235 (70%), Positives = 185/235 (78%)
Frame = +3
Query: 72 VXFTVSXLRGXXDKXRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRK 251
V FT +RG DK NIRNMSVIAHVDHGKSTLTDSLVSKAGIIA A+AGETRFTDTRK
Sbjct: 1 VNFTTDQIRGIMDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRK 60
Query: 252 DEQDRCITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTA 431
DEQDRCITIKSTAIS+++EL E D +IT P ++ E+GFLINLIDSPGHVDFSSEVTA
Sbjct: 61 DEQDRCITIKSTAISLYYELPESDFEYITQP--KDPKERGFLINLIDSPGHVDFSSEVTA 118
Query: 432 ALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQT 611
ALRVTDGAL QTETVLRQAIAERIKP+LFMNKMDR YQT
Sbjct: 119 ALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLDQEDLYQT 178
Query: 612 FQRIVXNVNVIIATYNDDGGPMGEVRVDPXKGSVGFGSGLHGWAFTLKQFSXMYA 776
F RIV ++NVIIATY+D+ GPMG ++V P KG+V FGSGLHGWAFTLKQ S +Y+
Sbjct: 179 FARIVESINVIIATYSDEDGPMGNIQVGPEKGTVAFGSGLHGWAFTLKQISEIYS 233
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 59.7 bits (138), Expect = 3e-09
Identities = 43/153 (28%), Positives = 68/153 (44%)
Frame = +3
Query: 108 DKXRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKST 287
D+ + R +I+H D GK+TLT+ L+ G I A A ++ IK
Sbjct: 5 DEIKRRRTFGIISHPDAGKTTLTEKLLLFGGAIQEAGAVKSN-------------KIKKG 51
Query: 288 AISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXX 467
A S F E+E + + + + + IN++D+PGH DF+ + L D +
Sbjct: 52 ATSDFMEIERQRGISVAT-SVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVI 110
Query: 468 XXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 566
QTE ++ I I+F+NKMDR
Sbjct: 111 DVAKGVEEQTEKLVEVCRMRNIPMIVFINKMDR 143
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 48.8 bits (111), Expect(2) = 3e-09
Identities = 23/54 (42%), Positives = 36/54 (66%)
Frame = +3
Query: 123 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 284
+RN S++AHVDHGKSTL D L+ G I+ + + + D + E++R IT+K+
Sbjct: 1941 VRNFSIVAHVDHGKSTLADRLLEVTGTISKS-SDNKQVLDKLQVERERGITVKA 1993
Score = 30.3 bits (65), Expect(2) = 3e-09
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +3
Query: 387 IDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMD 563
+ + GHVDFS EV+ +L G + QT + A + I +NK+D
Sbjct: 1991 VKAQGHVDFSYEVSRSLAACQGVVLLVDAAQGVQAQTVSNFFLAFNSELTIIPALNKID 2049
>SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)
Length = 563
Score = 50.8 bits (116), Expect = 1e-06
Identities = 28/78 (35%), Positives = 38/78 (48%)
Frame = +3
Query: 420 EVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXX 599
+V+ A+R+ DGAL QT VLRQA E I+P L +NK+DR
Sbjct: 93 QVSTAVRLCDGALVVVDVVEGVSPQTHVVLRQAWLENIRPCLVLNKIDRLITELKYSPSE 152
Query: 600 XYQTFQRIVXNVNVIIAT 653
+ Q+I+ VN I T
Sbjct: 153 AFIHLQQILEQVNAITGT 170
Score = 46.4 bits (105), Expect = 3e-05
Identities = 25/78 (32%), Positives = 38/78 (48%)
Frame = +3
Query: 414 SSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXX 593
+ +V+ A+R+ DGAL QT VLRQA E I+P L +NK+DR
Sbjct: 21 AGKVSTAVRLCDGALVVVDVVEGVSPQTHVVLRQAWLENIRPCLVLNKIDRLITELKYSP 80
Query: 594 XXXYQTFQRIVXNVNVII 647
+ Q+I+ V+ +
Sbjct: 81 SEAFIHLQQILEQVSTAV 98
>SB_19388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 50.0 bits (114), Expect = 2e-06
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = +3
Query: 696 PXKGSVGFGSGLHGWAFTLKQFSXMYA 776
P KG+V FGSGLHGWAFTLKQ S +Y+
Sbjct: 34 PEKGTVAFGSGLHGWAFTLKQISEIYS 60
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/95 (24%), Positives = 47/95 (49%)
Frame = +3
Query: 495 TETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVXNVNVIIATYNDDGGP 674
TE +L+ A+ E + + +NK+DR Y + ++ VN +++ +++
Sbjct: 170 TERLLKHAVQENLAITICINKIDRLILELKLPPTDAYYKLKHVIDEVNGLLSVFSEGA-- 227
Query: 675 MGEVRVDPXKGSVGFGSGLHGWAFTLKQFSXMYAD 779
++ + P G+V F S + + FTL F+ +Y D
Sbjct: 228 -DDLVISPLLGNVCFASSSYHFCFTLLSFAKLYVD 261
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 37.9 bits (84), Expect = 0.009
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = +3
Query: 357 KSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIK 536
K G I ID+PGH F+S VTD + QT +R A+ ++
Sbjct: 71 KLPSGEKITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGVKTQTVESIRHAMHAKVP 130
Query: 537 PILFMNKMDR 566
I+ +NK+D+
Sbjct: 131 LIVAINKIDK 140
Score = 32.7 bits (71), Expect = 0.34
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +3
Query: 132 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 233
++++ HVDHGK+TL D+L + + AG G T+
Sbjct: 31 VTIMGHVDHGKTTLLDAL-RNSSVAAGEAGGITQ 63
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 31.5 bits (68), Expect = 0.79
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +3
Query: 129 NMSVIAHVDHGKSTLTDSLVSKAG 200
N+ VI HVD GKST T L+ K G
Sbjct: 9 NIVVIGHVDSGKSTTTGHLIYKCG 32
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 31.5 bits (68), Expect = 0.79
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 132 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 233
++V+ HVDHGK++L D + A +I G G T+
Sbjct: 94 VTVMGHVDHGKTSLLD-YIRNANVIEGESGGITQ 126
Score = 31.5 bits (68), Expect = 0.79
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +3
Query: 378 INLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNK 557
I +D+PGH F++ +VTD + QT+ + A A + I +NK
Sbjct: 140 IAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMPQTKEAISHAQAAGVPIIFAINK 199
Query: 558 MDR 566
+D+
Sbjct: 200 IDK 202
>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1864
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Frame = -2
Query: 490 THTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKL---IKKPFSLFSRWSGFVMNTKS 320
TH+P + TTT AP+ E C G+ ++L K +L R+ G
Sbjct: 612 THSPSSTPTTTGAPTTAGFNEFNLEASEDCTGDYVELRDGDSKSAALIGRYCGTNAPMML 671
Query: 319 FSSSSK 302
SS K
Sbjct: 672 MGSSDK 677
>SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)
Length = 300
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 451 PSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 329
P R A TCPGE ++L+ + +RWS V+N
Sbjct: 242 PPPERQALACLRHTHTCPGEQLRLVGQ-LGHRARWSSSVIN 281
>SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1393
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 730 RPDPKPTEPLXGSTRTSPMGPPSS 659
+P PK T P+ G+ + PMGPP S
Sbjct: 641 KPRPKSTPPM-GAVQVLPMGPPPS 663
>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3292
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -2
Query: 508 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKP 368
ST+ T + STTT A ++ TS + E+ + IKKP
Sbjct: 2817 STIGTSRPTSEAFSTTTAATGTIPDSSATSATEGLSDAETEEFIKKP 2863
>SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 440
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = -2
Query: 490 THTPDTQSTTTRAPSVTRSAAVTSEEKST 404
T TP+TQSTTT P T+S T E +ST
Sbjct: 346 TETPETQSTTT-TPE-TQSTTTTPETQST 372
>SB_25617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 479
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 694 STRTSPMGPPSSLYVAIMTLTFXTIRWNV 608
+T T P PP+SLY + + T+ W+V
Sbjct: 262 NTCTGPPSPPTSLYKPFLNSSAITLSWSV 290
>SB_24314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 27.9 bits (59), Expect = 9.8
Identities = 9/32 (28%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = -1
Query: 497 SLYTHTRHTVNNHKGSIS-DTECSCYFRREIN 405
S Y+ + HT+N+H+ + + +T C+C ++ ++
Sbjct: 192 SPYSLSHHTINSHRKAYNEETSCTCRYKEGVS 223
>SB_3140| Best HMM Match : C1_3 (HMM E-Value=7)
Length = 340
Score = 27.9 bits (59), Expect = 9.8
Identities = 28/98 (28%), Positives = 40/98 (40%)
Frame = +1
Query: 478 LVCVYKLKQYCVRLLPSASSLFCS*TKWTVLFLSSNLKLKNYTRRSSVLXKMLTSL*PHI 657
L CV+ CV LP A S C+ T+ L + + Y R + + T+L P
Sbjct: 85 LHCVFTRCTLCVAHLPGAHSFHCAFTQCHSLHCAFT-RCTLYALRIYPVHTLCTALSPGA 143
Query: 658 TMMVVPWVRCVSTLXRALLVSGLVFMGGLSPSNNSLXC 771
+ + RC R V L F+ L P +SL C
Sbjct: 144 HSLHCAFTRCTLYALRIYPVHTL-FIAHL-PGAHSLHC 179
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,129,935
Number of Sequences: 59808
Number of extensions: 483120
Number of successful extensions: 1684
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1670
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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