Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_B01
(667 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 181 5e-46
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 60 1e-09
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 1e-08
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 53 2e-07
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 52 4e-07
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 48 9e-06
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 45 5e-05
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 44 8e-05
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 42 5e-04
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 42 5e-04
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 42 5e-04
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 41 8e-04
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 8e-04
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 8e-04
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 41 0.001
SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 39 0.003
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 38 0.007
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 38 0.010
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 37 0.013
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.013
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 36 0.022
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 36 0.030
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 36 0.030
SB_40963| Best HMM Match : Collagen (HMM E-Value=2.2e-09) 35 0.068
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.068
SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.090
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 34 0.12
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 33 0.28
SB_20476| Best HMM Match : AT_hook (HMM E-Value=0.014) 33 0.28
SB_30685| Best HMM Match : RRM_1 (HMM E-Value=2e-07) 32 0.37
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 32 0.37
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.48
SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23) 32 0.48
SB_21796| Best HMM Match : COLFI (HMM E-Value=0) 32 0.48
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.48
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 31 0.64
SB_29801| Best HMM Match : Collagen (HMM E-Value=3.2e-12) 31 0.64
SB_57515| Best HMM Match : CBFNT (HMM E-Value=3.3) 31 0.84
SB_45599| Best HMM Match : GRP (HMM E-Value=0.22) 31 0.84
SB_40962| Best HMM Match : COLFI (HMM E-Value=1.4013e-45) 31 0.84
SB_37674| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.84
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 31 1.1
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 31 1.1
SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_14329| Best HMM Match : RRM_1 (HMM E-Value=3.5e-05) 31 1.1
SB_25350| Best HMM Match : Collagen (HMM E-Value=0) 30 1.5
SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_48595| Best HMM Match : Transposase_29 (HMM E-Value=3.5) 30 1.9
SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017) 29 2.6
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28) 29 2.6
SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24) 29 2.6
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_26644| Best HMM Match : Collagen (HMM E-Value=0) 29 3.4
SB_41194| Best HMM Match : Collagen (HMM E-Value=5.9e-29) 29 3.4
SB_36009| Best HMM Match : Collagen (HMM E-Value=0) 29 4.5
SB_22116| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_6496| Best HMM Match : Collagen (HMM E-Value=0) 29 4.5
SB_3069| Best HMM Match : zf-C2H2 (HMM E-Value=1e-06) 29 4.5
SB_15832| Best HMM Match : zf-C2H2 (HMM E-Value=7e-35) 29 4.5
SB_14204| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_52473| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0026) 28 5.9
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_48561| Best HMM Match : AAA (HMM E-Value=0) 28 7.9
SB_36007| Best HMM Match : Collagen (HMM E-Value=9e-25) 28 7.9
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_28807| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_57148| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_17317| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_13124| Best HMM Match : Collagen (HMM E-Value=2.3e-11) 28 7.9
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 181 bits (440), Expect = 5e-46
Identities = 91/166 (54%), Positives = 123/166 (74%), Gaps = 5/166 (3%)
Frame = +2
Query: 173 DVLDIENSEEFE-VDEDGEQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAP 349
DVLD+E+ + E +D++GE + R+K +K+KGRGF G ++ R + YDS+
Sbjct: 222 DVLDLEDDKPSEFLDDEGEDDVQRVKS-GKKKKGRGFS----GDKSSSRPDA--YDSIEG 274
Query: 350 EGDSGTPGPQRS----VEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFL 517
G+ G GP R VEGWILFV+N+HEEAQE+DI FS++GEIKN+H+NLDRRTGF+
Sbjct: 275 -GEGGESGPARCEWHPVEGWILFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFI 333
Query: 518 KGYALVEYETYKQAASAREALDGADILGQAISVDWCFVKGPTKSHK 655
KGYALVEYET+K+A SA EAL+GA++LGQ ISVDW F++GP+K +
Sbjct: 334 KGYALVEYETFKEAQSALEALNGAEMLGQNISVDWAFIRGPSKKSR 379
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 60.5 bits (140), Expect = 1e-09
Identities = 30/73 (41%), Positives = 43/73 (58%)
Frame = +2
Query: 401 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREAL 580
+FV N+ EA EE ++ FSE G + + L DR TG KGY EY+ + A SA L
Sbjct: 27 VFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRNL 86
Query: 581 DGADILGQAISVD 619
+G ++ G+A+ VD
Sbjct: 87 NGYELNGRALRVD 99
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 57.2 bits (132), Expect = 1e-08
Identities = 31/78 (39%), Positives = 47/78 (60%)
Frame = +2
Query: 383 SVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAA 562
S++ LFVSN+ +A+E +I+ FS+ G +K + L + R G KGY VEYE A+
Sbjct: 167 SLDKHTLFVSNLPFDAKESEIEELFSKHGVVKQVRL-VTNRAGKPKGYGYVEYEQESSAS 225
Query: 563 SAREALDGADILGQAISV 616
+A LD ++ G+ ISV
Sbjct: 226 TAVLTLDKTEVKGRTISV 243
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 53.2 bits (122), Expect = 2e-07
Identities = 32/108 (29%), Positives = 53/108 (49%)
Frame = +2
Query: 293 GGGSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGE 472
G S++ +R R S S TP P + L+V+++ ++ +Q FS +G
Sbjct: 1129 GKRSSSSSSSRSRSRSPRRRKRSPTPKPTK------LYVAHLTRNVNKDHVQEIFSVYGR 1182
Query: 473 IKNIHLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISV 616
+K + L DR +G+A VEY ++ A + +DG I GQ I+V
Sbjct: 1183 VKTVDLPTDRTNNLSRGFAYVEYVDPEECEKALKHMDGGQIDGQEIAV 1230
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 52.0 bits (119), Expect = 4e-07
Identities = 26/83 (31%), Positives = 48/83 (57%)
Frame = +2
Query: 401 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREAL 580
+++++VH + E+DI++ F FG++ + L+ + TG KGY +EYE + A A ++
Sbjct: 201 IYIASVHPDLLEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIASM 260
Query: 581 DGADILGQAISVDWCFVKGPTKS 649
+ D+ GQ + V + PT S
Sbjct: 261 NLFDLGGQFLRVGRA-ITPPTSS 282
Score = 44.8 bits (101), Expect = 6e-05
Identities = 25/72 (34%), Positives = 40/72 (55%)
Frame = +2
Query: 401 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREAL 580
++V +++ E +EE I+ F FG I I L+ D KG+A VEY+ + A A E +
Sbjct: 104 VYVGSINFELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQLALEQM 163
Query: 581 DGADILGQAISV 616
+G + G+ I V
Sbjct: 164 NGVLLGGRNIKV 175
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 47.6 bits (108), Expect = 9e-06
Identities = 25/72 (34%), Positives = 37/72 (51%)
Frame = +2
Query: 407 VSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREALDG 586
V+N+ EE +E D+Q F G I I L D+ T KG+A + + + AA A E L G
Sbjct: 185 VTNLSEETRESDLQELFRPLGPISRIFLAKDKFTNQSKGFAFINFVHREDAARAIEVLSG 244
Query: 587 ADILGQAISVDW 622
++V+W
Sbjct: 245 FGYDHLILNVEW 256
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 45.2 bits (102), Expect = 5e-05
Identities = 23/79 (29%), Positives = 41/79 (51%)
Frame = +2
Query: 401 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREAL 580
L+V N+ A +++ F +FG + + + + G+A VEYE Y+ A A L
Sbjct: 6 LYVGNLGRNADSSELERAFEKFGRLSKVWVARNP-----PGFAFVEYEDYRDAEEAVREL 60
Query: 581 DGADILGQAISVDWCFVKG 637
DGA++ + I V++ +G
Sbjct: 61 DGANVCDRTIRVEFSNNRG 79
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 44.4 bits (100), Expect = 8e-05
Identities = 19/74 (25%), Positives = 42/74 (56%)
Frame = +2
Query: 398 ILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREA 577
+ +V + EE E+ + F FG+I ++ + +D T +G+ VE+E + A+A +
Sbjct: 6 VAYVGGLAEEVDEKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDN 65
Query: 578 LDGADILGQAISVD 619
++ +++ G+ I V+
Sbjct: 66 MNESELFGRTIRVN 79
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 42.3 bits (95), Expect = 3e-04
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 1/123 (0%)
Frame = +2
Query: 251 KARKRKGRGFGNEAGGGSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWI-LFVSNVHEE 427
K R R F E G S +RG Y+ G S +R G LFV N+ +
Sbjct: 7 KPRSRNSDSFSKERGD-SRGDRGGGRNYNRNNGAGYSSMK--ERKFTGRCRLFVGNLID- 62
Query: 428 AQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQA 607
EE+++ F ++GE+ + +N + KG+ + +T A +A+ LD A G+
Sbjct: 63 CDEEEMKEMFKKYGEVAEVFINKE------KGFGFIRLDTRLHAEAAKAGLDMATRKGRT 116
Query: 608 ISV 616
+ V
Sbjct: 117 LRV 119
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +2
Query: 401 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREAL 580
L V N+ E ++ FS+FG+++ + D R G KG+ +VE+ A +A + +
Sbjct: 128 LRVKNLDNLVTNELLEQAFSQFGDVERAVVVCDVR-GRSKGHGIVEFSRKNNAHNAMQKI 186
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/72 (29%), Positives = 41/72 (56%)
Frame = +2
Query: 401 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREAL 580
+F+ N+ + +EE ++ F+ G ++++ L DR+TG KG+ V +E+ K A +
Sbjct: 58 VFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTGIGKGFGYVLFES-KDAVVFALKM 116
Query: 581 DGADILGQAISV 616
+ A+ G+ I V
Sbjct: 117 NNAEFKGRKIRV 128
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 41.9 bits (94), Expect = 5e-04
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +2
Query: 401 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVE 538
LFV N+ E+ +E D+ F +G++ +H+ DR TG KG +V+
Sbjct: 321 LFVDNLSEDTKELDVLRYFRPYGQVAKVHILTDRETGKSKGCGVVK 366
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 41.9 bits (94), Expect = 5e-04
Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Frame = +2
Query: 335 DSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGF 514
D+ + S P EG +F+ N+ ++ +++I N F +FG+I + +D T
Sbjct: 396 DASEDDNHSQRSKPSDVKEGLTVFIRNLSFDSTQKNITNLFKQFGDIAYCKVVVDHLTQH 455
Query: 515 LKGYALVEYETYKQA----ASAREALDGADILGQAISVDWCFVKGPTKSHKKRR 664
KG A V+Y + + A+ E +G + G + VD G + +++
Sbjct: 456 SKGSAFVKYRSAESVTQCLAATDEDSEGLFLDGNRLQVDLAVTPGKLEQMSRQQ 509
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Frame = +2
Query: 401 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDR--RTGFLKGYALVEYETYKQAASARE 574
L + N+ E ++ FS FGE+ + + R G+ V++ AA A E
Sbjct: 249 LIIRNLAFNCTEAILKETFSAFGEVSEASVPQKKVGRRNRKMGFGFVQFTNVFDAAKALE 308
Query: 575 ALDGADILGQAISVDWCFVKGP-TKSHKKRR 664
++ ILG+ ++VDW K T++ +K +
Sbjct: 309 EMNAKKILGRPVAVDWAVPKSMYTENQEKHK 339
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 41.9 bits (94), Expect = 5e-04
Identities = 24/66 (36%), Positives = 33/66 (50%)
Frame = +2
Query: 389 EGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASA 568
+GW +FV + +EA + FS +G I NI L LD KGY V Y++A A
Sbjct: 270 QGWCIFVYGLPQEATPLFLYKLFSPYGAITNIELKLD------KGYGFVNMSNYEEACHA 323
Query: 569 REALDG 586
L+G
Sbjct: 324 ICCLNG 329
Score = 41.1 bits (92), Expect = 8e-04
Identities = 22/74 (29%), Positives = 35/74 (47%)
Frame = +2
Query: 401 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREAL 580
L ++ V +EDI+ F G + + L DR TG GYA V Y+ A A +
Sbjct: 29 LIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREM 88
Query: 581 DGADILGQAISVDW 622
+GA + + + V +
Sbjct: 89 NGARLQNKTLKVSF 102
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/80 (22%), Positives = 40/80 (50%)
Frame = +2
Query: 401 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREAL 580
L++S + ++ +EE+++ F FG+I + L +G +G V ++ +A +A + L
Sbjct: 115 LYISGLPKDMKEEEVEALFKPFGKIITSKV-LKDVSGEGRGTGFVRFDKRCEAQTAIDDL 173
Query: 581 DGADILGQAISVDWCFVKGP 640
+ + G + + F P
Sbjct: 174 NNKTLPGTNVKLTVKFANPP 193
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 41.5 bits (93), Expect = 6e-04
Identities = 25/72 (34%), Positives = 35/72 (48%)
Frame = +2
Query: 365 TPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYE 544
+P P S +LFV N+ E E + S +G I+ + L TG KGY VEY
Sbjct: 107 SPAPPES----LLFVGNLPFEFTETQFGDLMSPYGNIERLFLVRSEVTGDSKGYGFVEYA 162
Query: 545 TYKQAASAREAL 580
T + A A++ L
Sbjct: 163 TRENAMQAKQQL 174
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +2
Query: 443 IQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISV 616
I+ FS+ G + + ++ G +G+A V+Y T ++A + A +G + G I V
Sbjct: 222 IKELFSQTGNVTFAQVAINPANGGSRGFAFVDYATAEEAEKGQRAHNGRQVEGSNIRV 279
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 41.1 bits (92), Expect = 8e-04
Identities = 23/75 (30%), Positives = 39/75 (52%)
Frame = +2
Query: 398 ILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREA 577
+LFV ++ +ED++ FS FG I + + D++TG YA +E+E + A
Sbjct: 121 VLFVCKLNPVTTDEDLEIIFSRFGTILSCEVIRDQKTGESLQYAFIEFEKDEDCERAYFK 180
Query: 578 LDGADILGQAISVDW 622
+D I + I VD+
Sbjct: 181 MDNVLIDDRRIHVDF 195
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 41.1 bits (92), Expect = 8e-04
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = +2
Query: 464 FGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVDWC 625
+GEI N++L D++TG KG+ + YE + A + +G + G+ I VD C
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNGIKLGGRTIRVDHC 55
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 41.1 bits (92), Expect = 8e-04
Identities = 18/74 (24%), Positives = 37/74 (50%)
Frame = +2
Query: 401 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREAL 580
L V N+ ED++ F ++G++ +I++ DR T +G+A V + + A A + +
Sbjct: 18 LKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYEKRDAEDAMDCM 77
Query: 581 DGADILGQAISVDW 622
D ++ + W
Sbjct: 78 DATCLMAEKFVFRW 91
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/53 (30%), Positives = 32/53 (60%)
Frame = +2
Query: 401 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQA 559
LFV + E +E ++ FS++GE+ + + +D TG +G+A V+++ +A
Sbjct: 31 LFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQFKHQSEA 83
>SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/85 (24%), Positives = 45/85 (52%)
Frame = +2
Query: 365 TPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYE 544
TP + G L+V+N+ + D++ +FS++G++ + + + + + LV
Sbjct: 339 TPTKDKKEGGKSLWVANLSSITRAADLKTRFSQYGKVVGAKIVTNSKAPGAQCFGLVTMT 398
Query: 545 TYKQAASAREALDGADILGQAISVD 619
T ++AA + L ++ G+AI+VD
Sbjct: 399 TSEEAAKCIQHLHRTELHGRAITVD 423
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/72 (26%), Positives = 41/72 (56%)
Frame = +2
Query: 404 FVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREALD 583
++ N+ + E D+Q++FS + ++ ++ + DR T +G+A V + + K A LD
Sbjct: 233 YIGNLDFKVNEADLQDRFSRY-DVVDVQVISDRETQRPRGFAFVTFGSKKNMEDAINELD 291
Query: 584 GADILGQAISVD 619
G + G+++ V+
Sbjct: 292 GQEFDGRSMKVN 303
>SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/81 (25%), Positives = 35/81 (43%)
Frame = +2
Query: 353 GDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYAL 532
G+ G P G +F+ + + E+++ + GEI+ L +D TG KG+A
Sbjct: 139 GERGFPTTWTEESGTEVFIGKIPRDCLEDELIPLLEKCGEIREFRLQMDPATGLNKGFAF 198
Query: 533 VEYETYKQAASAREALDGADI 595
+ A A L+ DI
Sbjct: 199 CTFTEQTSAYQAITTLNDKDI 219
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/87 (24%), Positives = 44/87 (50%)
Frame = +2
Query: 401 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREAL 580
+++ N+ + A + +I+ +F FG ++++ + + G+A +E + A A L
Sbjct: 4 VYIGNIGDNASKREIEREFETFGPLRDVWVARNP-----PGFAFCVFEDRRDAEDAVREL 58
Query: 581 DGADILGQAISVDWCFVKGPTKSHKKR 661
DG I GQ V+ KGP++ ++
Sbjct: 59 DGRYICGQRARVE--LAKGPSRGRPRQ 83
>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 39.5 bits (88), Expect = 0.002
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 11/102 (10%)
Frame = +2
Query: 350 EGDSGTPG-----PQ--RSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNI----HLNL 496
+G+SGT G P+ +V L++ N+ + E +I +FGEI++ H N
Sbjct: 365 DGESGTSGVPLAAPEIDDAVSERKLWIGNLDKRLSEFNILKILQQFGEIEHFQFLFHGNG 424
Query: 497 DRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVDW 622
R G +GY VE++ + A A L+ +L +A+ VDW
Sbjct: 425 PNR-GEPRGYCFVEFKKKEDARKALRGLNKKIVLSRALVVDW 465
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/86 (24%), Positives = 43/86 (50%)
Frame = +2
Query: 401 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREAL 580
+FV + E E +++ F E+G +K + D+ G KGYA + +E+ + A R+
Sbjct: 10 IFVKGFNRETTESELRAFFEEYGVVKESKIVRDKH-GVSKGYAFITFESQEVADGLRDN- 67
Query: 581 DGADILGQAISVDWCFVKGPTKSHKK 658
G D + +S+ + ++S+ +
Sbjct: 68 KGLDFKDKVLSIGQAVRRKSSRSYSR 93
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +2
Query: 401 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREAL 580
+F+ + E+ ++ S FGE++ +L D TG KGYA EY A + L
Sbjct: 675 IFIGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEYVDLGITDVAIQGL 734
Query: 581 DGADI 595
+G +
Sbjct: 735 NGMQL 739
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/93 (23%), Positives = 47/93 (50%)
Frame = +2
Query: 380 RSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQA 559
R E +++ ++ + A + +I+N+F +G +K++ + + G+A ++ + A
Sbjct: 27 RRAEMTKVYIGSLGDNASKREIENEFGYYGPLKDVWVARNP-----PGFAFCIFDDRRDA 81
Query: 560 ASAREALDGADILGQAISVDWCFVKGPTKSHKK 658
A LDG I GQ + V+ KGP++ +
Sbjct: 82 EDAVRELDGRYICGQRVRVE--LAKGPSRGRPR 112
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = +2
Query: 422 EEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREALD 583
++ +ED++++F FG+I+ + + D +T KGY V++ AA A E D
Sbjct: 62 KDFNDEDLRSKFESFGDIEYVQIVRDHKTRENKGYGYVKFHKSSTAAMALENCD 115
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 37.9 bits (84), Expect = 0.007
Identities = 20/73 (27%), Positives = 37/73 (50%)
Frame = +2
Query: 401 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREAL 580
++V + E+ E I F + G + N+H+ DR T +GY VE+ + A A + +
Sbjct: 15 IYVGGLDEKVSEALIWELFLQSGPVVNVHMPKDRITQLHQGYGFVEFLGEEDADYAIKVM 74
Query: 581 DGADILGQAISVD 619
+ + G+ I V+
Sbjct: 75 NMIKVYGKPIRVN 87
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 37.5 bits (83), Expect = 0.010
Identities = 17/80 (21%), Positives = 40/80 (50%)
Frame = +2
Query: 371 GPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETY 550
G + + ++++ ++ E +I+ F +FG + I L+ +++ KGYA VE+
Sbjct: 90 GDEDELSPGVIYLGHIPHGFFENEIKKFFEQFGTVNRIRLSRSKKSARSKGYAFVEFACD 149
Query: 551 KQAASAREALDGADILGQAI 610
+ A A + + + G+ +
Sbjct: 150 EVAKIAADTMHNYMMFGRLL 169
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 37.1 bits (82), Expect = 0.013
Identities = 20/71 (28%), Positives = 39/71 (54%)
Frame = +2
Query: 425 EAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQ 604
+ +E D++ +G+I++I L +GY VE++ ++ A A L+G D++G+
Sbjct: 699 DVRESDVEKFLRGYGKIRDISLK--------RGYGFVEFDDHRDAEDAVHDLNGRDLIGE 750
Query: 605 AISVDWCFVKG 637
+ V+ F KG
Sbjct: 751 RVVVE--FSKG 759
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 37.1 bits (82), Expect = 0.013
Identities = 32/123 (26%), Positives = 51/123 (41%)
Frame = +2
Query: 254 ARKRKGRGFGNEAGGGSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQ 433
A + RG GN GG RG RG + G P P S L V N+ +
Sbjct: 253 ANSKPSRGGGNTPRGGGRG-RGGRGGFSG----GRDQNP-PNSS-----LIVRNLSYDTT 301
Query: 434 EEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAIS 613
+ + F K I DR +G +G+ V+Y+ + A + GA++ G+ +
Sbjct: 302 TDSLGAAFEGCSNAKVI---FDRESGESRGFGFVDYDDVETAKKVLSEMAGAEVDGRQVR 358
Query: 614 VDW 622
+D+
Sbjct: 359 LDF 361
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 36.3 bits (80), Expect = 0.022
Identities = 19/70 (27%), Positives = 39/70 (55%)
Frame = +2
Query: 401 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREAL 580
++V N ++ +E ++ +E G+I ++ + D G KG+ V +ET ++A A L
Sbjct: 111 VYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPE-GKSKGFGFVSFETPEEAEEAVNVL 169
Query: 581 DGADILGQAI 610
+G +I G+ +
Sbjct: 170 NGKEIGGRRL 179
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 35.9 bits (79), Expect = 0.030
Identities = 29/132 (21%), Positives = 52/132 (39%)
Frame = +2
Query: 209 VDEDGEQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAPEGDSGTPGPQRSV 388
VD E +++ +K + G ++ R + R DSL G+ +
Sbjct: 45 VDTPTEASGDKMRNGQEDKKAYSVTSSQSPGLSSGRSSSDRMDSLPDTGEE-------KL 97
Query: 389 EGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASA 568
L++ + ++D+ ++G I + LD+ T KGY V++E+ A A
Sbjct: 98 SKTNLYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDFESPISAQKA 157
Query: 569 REALDGADILGQ 604
AL I Q
Sbjct: 158 VAALVNKGIQAQ 169
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 35.9 bits (79), Expect = 0.030
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = +2
Query: 428 AQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQA 559
A + ++ FSEFG++ + L + G +KG+A +E+E+ +QA
Sbjct: 99 ADHDWLKKVFSEFGKVLYVSLPRFKHNGEIKGFAFIEFESKQQA 142
>SB_40963| Best HMM Match : Collagen (HMM E-Value=2.2e-09)
Length = 234
Score = 34.7 bits (76), Expect = 0.068
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 215 EDGEQGIARLKEKARKRKGRGF-GNEAGGGSAAERGNRGRYDSLAPEGDSGTPG 373
E G+QG + + K +G G GGG E+G RG + P G G G
Sbjct: 2 ETGDQGATGITGEVGKEGEQGVKGARGGGGVKGEKGYRGELGKVGPSGPQGRKG 55
Score = 32.7 bits (71), Expect = 0.28
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +2
Query: 206 EVDEDGEQGIARLKEKARKRKGRGFGNEAGG-GSAAERGNRGRYDSLAPEGDSGTPGPQR 382
EV ++GEQG+ + + +G+ E G G + +G +G P G G GPQ
Sbjct: 14 EVGKEGEQGVKGARGGGGVKGEKGYRGELGKVGPSGPQGRKGFKGEPGPPGLPGEQGPQG 73
Query: 383 SVEG 394
G
Sbjct: 74 KFGG 77
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 34.7 bits (76), Expect = 0.068
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Frame = +2
Query: 383 SVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKN---IHLNLDRRTGFLKGYALVEYETYK 553
SV LFV ++ + +++I +FS+ + ++L+ D++ G +G+A +EYE+++
Sbjct: 229 SVANSRLFVGSIPKTKSKQEILEEFSKVTNGLDDVIVYLSADQK-GKNRGFAFLEYESHQ 287
Query: 554 QAASAREALDGADIL---GQAISVDW 622
A+ AR L I ++VDW
Sbjct: 288 AASLARRRLASGRIKVWGNIVVTVDW 313
>SB_37827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 34.3 bits (75), Expect = 0.090
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 458 SEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISV 616
S G ++N+ + D+ TG + + VE+ + A E LDG + +AI+V
Sbjct: 478 SNAGPLENVRIPTDKNTGQQRSFGFVEFSSPVSVHYASELLDGIRLYDRAINV 530
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +2
Query: 401 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASA 568
LFV + E+ ++ ++ F++FGEI+ + DR T KGY V T A A
Sbjct: 12 LFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTMATSDAAELA 67
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 33.1 bits (72), Expect = 0.21
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +2
Query: 401 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYK 553
LFV ++ E E ++ F +GE+ ++ + D T +G+ V + YK
Sbjct: 16 LFVGGLNRETTNETLREYFEAYGELTDVVVICDSATKKSRGFGYVTFADYK 66
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 32.7 bits (71), Expect = 0.28
Identities = 41/165 (24%), Positives = 62/165 (37%), Gaps = 4/165 (2%)
Frame = +2
Query: 182 DIENSEEFEVDEDGEQ--GIARLKEKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAPEG 355
D ++E+ DG + G E R GRG G GGG G GR
Sbjct: 309 DPRDAEDAVKGRDGHEFDGYRIRVEFPRGGSGRGGGGGGGGGGGGGGGGGGRGGGGGFSS 368
Query: 356 DSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALV 535
P P+RS + + VS + +D+++ E G++ L D F G +V
Sbjct: 369 RGRGPPPRRS--DFRVQVSGLPPTGSWQDLKDHMREAGDV----LFTD---VFKDGTGVV 419
Query: 536 EYETYKQAASAREALDGADILGQAISVDWCFVKG--PTKSHKKRR 664
E+ Y A LD + + VK ++SH + R
Sbjct: 420 EFARYDDMKFAIRNLDDSKFRSHEGETSYIRVKSDLQSRSHSRSR 464
>SB_20476| Best HMM Match : AT_hook (HMM E-Value=0.014)
Length = 475
Score = 32.7 bits (71), Expect = 0.28
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Frame = +2
Query: 188 ENSEEFEVDEDGEQG---IARLKEKARKRKGRGFGNEAGGGSAAERGNRGR 331
+N +E +++ED E+ +A+ + + +GRG G G GS+ RG RGR
Sbjct: 326 DNDDEDDIEEDDEEEWSPVAKSPSRRGRGRGRGRGRGRGRGSSRGRG-RGR 375
Score = 30.3 bits (65), Expect = 1.5
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Frame = +2
Query: 173 DVLDIENSEEFEVDEDGEQGIAR---------LKEKARKRKGRGFGNEAGGGSAAERGNR 325
D +D E EEF D D E I K +R+ +GRG G G G + RG R
Sbjct: 313 DDVDRELLEEFMFDNDDEDDIEEDDEEEWSPVAKSPSRRGRGRGRGRGRGRGRGSSRG-R 371
Query: 326 GR 331
GR
Sbjct: 372 GR 373
>SB_30685| Best HMM Match : RRM_1 (HMM E-Value=2e-07)
Length = 349
Score = 32.3 bits (70), Expect = 0.37
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +2
Query: 245 KEKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAPEG 355
K+K R +KGR FG G G +R N R D AP+G
Sbjct: 293 KQKRRHKKGRDFGR--GRGRGGKRRNFERSDQSAPKG 327
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 32.3 bits (70), Expect = 0.37
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +2
Query: 401 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREAL 580
LFV N+ + D++ F +GE+ I +++ ++ G YA V++ A AR +
Sbjct: 251 LFVGNIEKTTTYGDLKEAFERYGEV--IDVDIKKQPG-NNPYAFVQFAELSSAIQARRKM 307
Query: 581 D 583
D
Sbjct: 308 D 308
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 31.9 bits (69), Expect = 0.48
Identities = 24/92 (26%), Positives = 41/92 (44%)
Frame = +2
Query: 311 ERGNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHL 490
+R NRG + P+ + P LFV N+ +D++ F +FG + ++ +
Sbjct: 210 DRRNRGGGNFTPPQQEYIPPEEDPKATR-TLFVGNLETGISCQDLRLSFEKFGVVLDVDI 268
Query: 491 NLDRRTGFLKGYALVEYETYKQAASAREALDG 586
R G YA V++ AA A+ A+ G
Sbjct: 269 KRPAR-GQGNTYAFVKFADLDVAAKAKCAMQG 299
>SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23)
Length = 44
Score = 31.9 bits (69), Expect = 0.48
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 464 FGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREALDG 586
+GEI N++L D++TG KG+ + YE + A + +G
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNG 42
>SB_21796| Best HMM Match : COLFI (HMM E-Value=0)
Length = 1239
Score = 31.9 bits (69), Expect = 0.48
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 281 GNEAGGGSAAERGNRGRYDSLAPEGDSGTPGP 376
G + G+ +RG RG S P+G++G PGP
Sbjct: 117 GAQGRPGAPGDRGERGSAGSDGPKGEAGGPGP 148
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 31.9 bits (69), Expect = 0.48
Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +2
Query: 401 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKG-YALVEYETYKQAASAREA 577
L+V N+ + +E I + F++ ++ + ++ T KG Y VE+ET+ A A+
Sbjct: 371 LYVGNLDPKCTQELICSIFNKIAKVVRCKM-INSPTD--KGPYCFVEFETHADAQEAKFR 427
Query: 578 LDGADILGQAISVDW 622
+D ++ + + V+W
Sbjct: 428 MDQRTVMDKKLKVNW 442
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 31.5 bits (68), Expect = 0.64
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 215 EDGEQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRG 328
E G + ++ R+R G G G GGG RG RG
Sbjct: 986 EPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGRG 1023
>SB_29801| Best HMM Match : Collagen (HMM E-Value=3.2e-12)
Length = 182
Score = 31.5 bits (68), Expect = 0.64
Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 272 RGFGNEAGG-GSAAERGNRGRYDSLAPEGDSGTPG 373
RG AG GS E+GNRGR P G G PG
Sbjct: 22 RGPPGPAGPPGSKGEKGNRGRRGRRGPRGPPGKPG 56
>SB_57515| Best HMM Match : CBFNT (HMM E-Value=3.3)
Length = 213
Score = 31.1 bits (67), Expect = 0.84
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +2
Query: 191 NSEEFEVDEDGEQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAPEGDSGT 367
N E+ EV ED E+ ++EKA+KR R FG +++ G SL D T
Sbjct: 105 NEEDAEVKEDFEESPKEVEEKAKKR--RSFGMFKKKDKESDKDKAGSETSLNAADDEET 161
>SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)
Length = 595
Score = 31.1 bits (67), Expect = 0.84
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 230 GIARLKEKARKRKGRGFGNEAGGGSAAERGNRGR 331
G + ++ R+R G G G GGG RG RGR
Sbjct: 502 GSSIVRRPRRRRGGGGGGGGGGGGGGGGRGGRGR 535
>SB_40962| Best HMM Match : COLFI (HMM E-Value=1.4013e-45)
Length = 577
Score = 31.1 bits (67), Expect = 0.84
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 215 EDGEQGIARLKEKARKRKGRGFGNEAG-GGSAAERGNRGRYDSLAPEGDSGTPGP 376
+DGE+G LK + G+G G G RG +G+ + P G G PGP
Sbjct: 198 KDGEKG---LKGETGPIGGQGLEGRTGVQGDDGIRGPQGKQGGVGPTGGHGPPGP 249
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Frame = +2
Query: 269 GRGFGNEAG-GGSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNVH 421
G G E G G ERG +G + S+ G G PG + L N H
Sbjct: 300 GYGLMGEKGTAGRLGERGKKGPFGSIGDMGPPGEPGKPGEILNLHLLKQNTH 351
>SB_37674| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 31.1 bits (67), Expect = 0.84
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +2
Query: 197 EEFEVDEDGEQGIARLKEKARKRKGRGFGNE-AGGGSAAERGNRGRYDSLAPEGDSG-TP 370
EEF ED +G ++E ++ RG+ ++ A AE N G ++ + +SG TP
Sbjct: 384 EEFSDSEDEGEGRRDVRENRPHKRPRGYASDKAVTNGNAENANGGSDEAKSTSSNSGNTP 443
Query: 371 GPQ 379
P+
Sbjct: 444 APK 446
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +2
Query: 434 EEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAIS 613
E+D++ F +G +++I+L Y VE+E + A A +G ++LG+ I
Sbjct: 16 EDDVRRFFRSYGRLRDINLK--------NNYGFVEFEDDRDADDAVYECNGKEMLGERIL 67
Query: 614 VD 619
V+
Sbjct: 68 VE 69
>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/68 (22%), Positives = 33/68 (48%)
Frame = +2
Query: 401 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREAL 580
++ + + +E D++ +G ++ I + L GY VE++ Y+ A L
Sbjct: 7 VYFGRLPRDCRERDLEKFVRGYGRVREISMKL--------GYGFVEFDDYRDADDCVYDL 58
Query: 581 DGADILGQ 604
+G ++LG+
Sbjct: 59 NGRNLLGE 66
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 188 ENSEEFEVDEDGEQGIARLKEKARKRKG 271
E +E + DEDGE G + K+K +K+KG
Sbjct: 387 EEGKEGDEDEDGEGGDKKKKKKKKKKKG 414
>SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1271
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/67 (28%), Positives = 28/67 (41%)
Frame = +2
Query: 173 DVLDIENSEEFEVDEDGEQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAPE 352
D +D + + F + + EQ + R G G GS +RG G + P+
Sbjct: 999 DTVDQQMLDHFMISQILEQNLTLFYGGLMGRSGP-VGPPGPPGSPGDRGQTGVPGPVGPD 1057
Query: 353 GDSGTPG 373
GD G PG
Sbjct: 1058 GDIGAPG 1064
>SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1182
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 434 EEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYA 529
E +++ FS FG + ++ + DRRTG KG A
Sbjct: 1079 ELELETFFSNFGPVADVRIVCDRRTGLNKGDA 1110
>SB_14329| Best HMM Match : RRM_1 (HMM E-Value=3.5e-05)
Length = 365
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/74 (28%), Positives = 37/74 (50%)
Frame = +2
Query: 443 IQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVDW 622
+ FSE+GEI+N+ L + F++ Y L + A R++LD ++L ++ W
Sbjct: 148 VYKHFSEWGEIENMRLLEHKGVAFVR-YKLRGSAEFAMEAMQRQSLDDNEVL----NIRW 202
Query: 623 CFVKGPTKSHKKRR 664
K P +KR+
Sbjct: 203 A-TKDPNPWVEKRK 215
>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1112
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +2
Query: 272 RGFGNEAG-GGSAAERGNRGRYDSLAPEGDSGTPGP 376
RG AG G+A E G RG P+G GT GP
Sbjct: 416 RGMPGVAGKNGNAGEPGERGPVGPQGPQGAPGTQGP 451
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Frame = +2
Query: 215 EDGEQGIARLKEKARKRKGR--GFGNEAGGGSAAERGNRGRYDSLAPEGDSGTPG 373
E G QG R K R+G G G+ RG RGR +G G PG
Sbjct: 511 EPGAQGTKR-KPGTPGRQGMPGASGRRGAPGAKGSRGERGRVGPPGIDGKDGAPG 564
>SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +2
Query: 518 KGYALVEYETYKQAASAREALDGADILGQAISVDWCFVKGPT-KSHKKRR 664
+GYA +EYE + +A + DG I G+ I VD +G T KS + RR
Sbjct: 47 RGYAFIEYEHERDMHAAYKHADGKKIDGRRIVVD--VERGRTVKSWRPRR 94
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +2
Query: 254 ARKRKG-RGF-GNEAGGGSAAERGNRGRYDSLAPEGDSGTPGPQ 379
A+ KG RGF GN G G +G RG + G G+ GP+
Sbjct: 3684 AKGDKGERGFPGNNGGKGERGAQGPRGEKGNTGAPGSQGSTGPR 3727
>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1646
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/92 (26%), Positives = 40/92 (43%)
Frame = +2
Query: 347 PEGDSGTPGPQRSVEGWILFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGY 526
P SG G + W++ + N+ A ++ ++G + LNL G
Sbjct: 1423 PRMGSGRGGAN-PMSTWLV-LRNLSPRADPTAMRAVCQQYGPLLTFTLNLRH------GN 1474
Query: 527 ALVEYETYKQAASAREALDGADILGQAISVDW 622
+L+ Y QAASAR L+G + G + D+
Sbjct: 1475 SLIRYSNKDQAASARNNLNGMMVKGMQLIADF 1506
>SB_48595| Best HMM Match : Transposase_29 (HMM E-Value=3.5)
Length = 565
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/60 (38%), Positives = 29/60 (48%)
Frame = +2
Query: 170 ADVLDIENSEEFEVDEDGEQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAP 349
A VLD+E + FE E+GE G A GRG G GGG RG G+ + +P
Sbjct: 347 AQVLDVE-MQSFE--EEGEGGRAG-------GSGRGEGEGQGGGGGEVRGAEGKEEENSP 396
>SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +2
Query: 401 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNL--DRRTGFLKGYALVEY 541
LF+ + +E EED++ + + + + DR T KGY V +
Sbjct: 106 LFIGGLKDEHSEEDVKTALAPLSPFAPLEIKMVRDRETNKFKGYCFVNF 154
>SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)
Length = 255
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 401 LFVSNVHEEAQEEDIQNQFSEFGEIKNI 484
LFV + + A+EED++ FS FG I+ +
Sbjct: 216 LFVGMISKHAKEEDLRVMFSPFGTIEEL 243
>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
Length = 440
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = +2
Query: 428 AQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQA 607
A E+D++N FG++ R F +GYA V ++ K A A AL+ ++ G
Sbjct: 14 ATEKDLENLVKVFGKV--------REVDFKEGYAYVVFKENKDADRAVAALNNSEFHGAK 65
Query: 608 ISVD 619
I ++
Sbjct: 66 ILME 69
>SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24)
Length = 343
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +2
Query: 401 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHLNLDRRTGFLKGYALVEY----ETYKQAASA 568
+ + N+ E I FS GEI ++++ + +T KG+ +V + E ++
Sbjct: 123 VILKNIPSSIGESQILEHFSSSGEIASVYIPENLKTKERKGHCIVTFASVTEAFEVVKKR 182
Query: 569 REALDGADIL 598
+ + G DI+
Sbjct: 183 KHHIHGYDII 192
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +2
Query: 275 GFGNEAGGGSAAERGNRGRYDSLAPEGDSGTPGP 376
GF G G++G + P GD G PGP
Sbjct: 626 GFPGPPGDSDYGPPGDKGLKGNTGPPGDEGVPGP 659
>SB_26644| Best HMM Match : Collagen (HMM E-Value=0)
Length = 877
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 281 GNEAGGGSAAERGNRGRYDSLAPEGDSGTPGP 376
G + G A G G + PEG++G PGP
Sbjct: 805 GPQGPEGEAGANGVSGPKGEMGPEGEAGQPGP 836
>SB_41194| Best HMM Match : Collagen (HMM E-Value=5.9e-29)
Length = 407
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +2
Query: 206 EVDEDGEQGIARLKEKARKRKGRGF-GNEAGGGSAAERGNRGRYDSLAPEGDSGTPGPQR 382
E+ DG G+A + + + G G+ G A RG +G P G G GP
Sbjct: 319 EMGPDGPAGLAGSQGEQGPQGPVGMKGDNGPQGGAGSRGTKGEAGPPGPNGPKGNVGPAG 378
Query: 383 SV 388
V
Sbjct: 379 QV 380
>SB_36009| Best HMM Match : Collagen (HMM E-Value=0)
Length = 687
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 281 GNEAGGGSAAERGNRGRYDSLAPEGDSGTPGPQ 379
G G+A G RG+ ++ GD+G GPQ
Sbjct: 169 GRNGANGTAGPPGVRGQPGAIGSPGDAGRAGPQ 201
>SB_22116| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 36
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +2
Query: 281 GNEAGGGSAAERGNRGRYDSLAPEGDSGTPGP 376
G G E+G+RG P G+ G PGP
Sbjct: 4 GRAGDAGKPGEKGSRGPPGPAGPIGNPGKPGP 35
>SB_6496| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1234
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +2
Query: 221 GEQGIARLKEKARKRKGRGFGNEAG-GGSAAERGNRGRYDSLAPEGDSGTPGPQ 379
G +G ++ KA +G+ E G G E G G+ G G PGP+
Sbjct: 23 GRRGPRGMRGKAGMSGPKGYSGEKGMQGDRGENGLPGKLGHQGKRGRRGKPGPE 76
>SB_3069| Best HMM Match : zf-C2H2 (HMM E-Value=1e-06)
Length = 625
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 221 GEQGIARLKEKARKRKGRGFGNEAG 295
GEQGI RLKE + + K F N +G
Sbjct: 29 GEQGIKRLKEDSGRDKQSSFKNSSG 53
>SB_15832| Best HMM Match : zf-C2H2 (HMM E-Value=7e-35)
Length = 337
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 221 GEQGIARLKEKARKRKGRGFGNEAG 295
GEQGI RLKE + + K F N +G
Sbjct: 172 GEQGIKRLKEDSGRDKQSSFKNSSG 196
>SB_14204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Frame = +2
Query: 188 ENSEEFEVDEDGEQGIARLKEKARKR---KGRGFGNEAGGGSAAERGNRGRYDSLAPEGD 358
E E E +E E+G EK + +G GNE G E GN + EG+
Sbjct: 112 EEGNEEENEEGNEEGNEEGNEKENEEGNEEGNEEGNEEGNEVGNEEGNEEENEERNEEGN 171
Query: 359 SG 364
G
Sbjct: 172 RG 173
>SB_52473| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0026)
Length = 936
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/44 (25%), Positives = 20/44 (45%)
Frame = +2
Query: 203 FEVDEDGEQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRGRY 334
+ D G+ G + K+R G G +E+G + + N+ Y
Sbjct: 449 YSPDNYGQYGAMLVSRKSRSENGNGLADESGCSDSLTKANKSIY 492
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 28.3 bits (60), Expect = 5.9
Identities = 9/30 (30%), Positives = 21/30 (70%)
Frame = +2
Query: 401 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHL 490
L+V + + E+D+++ F +FGE+++I +
Sbjct: 306 LYVGGLEGKVTEQDLRDHFYQFGELRSISM 335
>SB_48561| Best HMM Match : AAA (HMM E-Value=0)
Length = 2021
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +2
Query: 218 DGEQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAPEGD 358
DG G++ ++AR R GRG G G + RG R + PE D
Sbjct: 465 DGTGGLSNGNDRARGRGGRG-----GRGRGSGRGRRSTSSAPTPELD 506
>SB_36007| Best HMM Match : Collagen (HMM E-Value=9e-25)
Length = 311
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 215 EDGEQGIARLKEKARKRKGRGF-GNEAGGGSAAERGNRGRYDSLAPEGDSGTPGP 376
E G +G + KR G G+ G G A ++G G S P+G +G GP
Sbjct: 80 EKGYRGAPGRQGLQGKRGPEGDPGSPGGSGEAGDKGVDGPPGSPGPQGFNGARGP 134
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +2
Query: 401 LFVSNVHEEAQEEDIQNQFSEFGEIKNIHL 490
LFV + E E+ + F++FGE+ ++++
Sbjct: 201 LFVGRLPESTTEKTLMEYFAQFGEVTDVYI 230
>SB_28807| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 414
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +2
Query: 224 EQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAPEGDSGTPG 373
E + ++KEK KRK F ++ GGG + D +GD G
Sbjct: 49 EHPVKKVKEKREKRKNFDFVDDNGGGDGDDDDGDDDNDDDDGDGDGDGDG 98
>SB_57148| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 482
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +2
Query: 224 EQGIARLKEKARKRKGRGFGNEAGGGSAAERGNRGRYDSLAPEGDSGTPG 373
E + ++KEK KRK F ++ GGG + D +GD G
Sbjct: 256 EHPVKKVKEKREKRKNFDFVDDNGGGDGDDDDGDDDNDDDDGDGDGDGDG 305
>SB_17317| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +2
Query: 215 EDGEQGIARLKEKARKRKGRG-FGNEAGGGSAAERGNRGRYDSLAPEGDSGTPGP--QRS 385
E G QG + + + +G FG G+ E+G RG+ P G G GP R
Sbjct: 337 ESGAQGDSGDEGDGGAKGDKGVFGGVGLDGAEGEQGARGKSGDFGPIGPPGPLGPPGDRG 396
Query: 386 VEG 394
++G
Sbjct: 397 MQG 399
>SB_13124| Best HMM Match : Collagen (HMM E-Value=2.3e-11)
Length = 476
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +2
Query: 281 GNEAGGGSAAERGNRGRYDSLAPEGDSGTPGPQRSVEGWILFVSNV-HEE 427
G + G+ +G +G P+G+ GTPG + G F SN H E
Sbjct: 383 GPQGPNGTRGLQGEKGPQGDQGPKGEPGTPG-AKGESGGPPFASNASHNE 431
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,746,491
Number of Sequences: 59808
Number of extensions: 306234
Number of successful extensions: 1438
Number of sequences better than 10.0: 86
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1397
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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