Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_A20
         (541 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L38852-1|AAL31361.1|  102|Homo sapiens signal peptidase 12kDa su...    72   1e-12
BC000884-1|AAH00884.1|  104|Homo sapiens signal peptidase comple...    69   8e-12

>L38852-1|AAL31361.1|  102|Homo sapiens signal peptidase 12kDa
           subunit protein.
          Length = 102

 Score = 71.7 bits (168), Expect = 1e-12
 Identities = 30/76 (39%), Positives = 43/76 (56%)
 Frame = +1

Query: 85  LXFFXSLPTHIAXVGQAKAXXLYRAIITLFSIVGFVWGYIVQQFSQSVYXXXXXXXXXXX 264
           L    SLPT +   GQ  A  +++ I    +IVGF++GY+ +QF  +VY           
Sbjct: 2   LEHLSSLPTQMDYKGQKLAEQMFQGIYLFSAIVGFIYGYVAEQFGWTVYIVMAGFAFSCL 61

Query: 265 XTVPPWPMYRRNPLNW 312
            T+PPWP+YRR+PL W
Sbjct: 62  LTLPPWPIYRRHPLKW 77


>BC000884-1|AAH00884.1|  104|Homo sapiens signal peptidase complex
           subunit 1 homolog (S. cerevisiae) protein.
          Length = 104

 Score = 69.3 bits (162), Expect = 8e-12
 Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
 Frame = +1

Query: 85  LXFFXSLPTHIAXVGQAKAXXLYRAIITLFSIVGFVWGYIVQQFSQSVYXXXXXXXXX-- 258
           L    SLPT +   GQ  A  +++ II   +IVGF++GY+ +QF  +VY           
Sbjct: 2   LEHLSSLPTQMDYKGQKLAEQMFQGIILFSAIVGFIYGYVAEQFGWTVYIVMAGFAFSCL 61

Query: 259 XXXTVPPWPMYRRNPLNW 312
              T+PPWP+YRR+PL W
Sbjct: 62  AQLTLPPWPIYRRHPLKW 79


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,641,072
Number of Sequences: 237096
Number of extensions: 886875
Number of successful extensions: 2307
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2305
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5251598958
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)