Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_A19
(835 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q8DW04 Cluster: Putative ComB, accessory factor for Com... 36 1.7
UniRef50_A0CXE9 Cluster: Chromosome undetermined scaffold_30, wh... 35 2.2
UniRef50_Q8XNZ7 Cluster: Putative uncharacterized protein CPE018... 35 2.9
UniRef50_Q4YUE6 Cluster: Putative uncharacterized protein; n=3; ... 35 2.9
UniRef50_O96218 Cluster: Putative uncharacterized protein PFB062... 35 2.9
UniRef50_A3UAX4 Cluster: Possible CapK protein; n=1; Croceibacte... 34 3.8
UniRef50_UPI00006CEBD5 Cluster: cyclic nucleotide-binding domain... 34 5.1
UniRef50_Q6CRB1 Cluster: Similar to sp|Q02773 Saccharomyces cere... 34 5.1
UniRef50_Q7REN3 Cluster: Putative uncharacterized protein PY0503... 33 8.8
UniRef50_Q7R1D8 Cluster: GLP_306_28090_21908; n=2; Giardia lambl... 33 8.8
>UniRef50_Q8DW04 Cluster: Putative ComB, accessory factor for ComA;
n=1; Streptococcus mutans|Rep: Putative ComB, accessory
factor for ComA - Streptococcus mutans
Length = 300
Score = 35.5 bits (78), Expect = 1.7
Identities = 27/100 (27%), Positives = 46/100 (46%)
Frame = +1
Query: 325 VPAYIVQSLVKNNLDNNPAVVLNKCIVISKEQYIQLASENLFYVDRGVLWLSLKLSTNYK 504
+ +Y S++KNNLDNN AV ++ +Y + AS N + + +K +
Sbjct: 62 IQSYSDSSIIKNNLDNNAAVEKGDVLI----EYSENASPNRQTEQKNI----IKERQKRE 113
Query: 505 NKHKRKKQHNTKEHLHKFAFMTSEIHKKLWADRTADDIEN 624
K K+K Q + K+ K + + KK ++ D EN
Sbjct: 114 EKEKKKHQKSKKKKKSKSKKASKDKKKKSKDKESSSDDEN 153
>UniRef50_A0CXE9 Cluster: Chromosome undetermined scaffold_30, whole
genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_30,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 737
Score = 35.1 bits (77), Expect = 2.2
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Frame = +1
Query: 343 QSLVKNNLDNNPAVVLNKCIVISK--EQYIQLASENLFYVDRGVLWLSLKLSTNYKNKHK 516
+S V ++L NNP +++ K + ISK + I+L +N + K+ N N
Sbjct: 481 ESTVPSDLSNNPEIIMEKELQISKLEQSIIELNQKNNELKQK---LTQNKIEINDLNHEL 537
Query: 517 RKKQHNTKEHLHKFAFMTSEIHK 585
+++ ++HL K AF SE+++
Sbjct: 538 EQQKVTNQQHLDKRAFALSELNR 560
>UniRef50_Q8XNZ7 Cluster: Putative uncharacterized protein CPE0180;
n=3; Clostridium perfringens|Rep: Putative
uncharacterized protein CPE0180 - Clostridium
perfringens
Length = 263
Score = 34.7 bits (76), Expect = 2.9
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 646 GSKLLKPDIGFVTENELHNMSSCFGLNDFNDIEITFHPGTFIIMLT 783
G KL I F T+ ++ +GL+DF+ I+ +PG +LT
Sbjct: 162 GVKLATASIAFWTKTSFRHVQMAYGLSDFSKYPISIYPGAIKFLLT 207
>UniRef50_Q4YUE6 Cluster: Putative uncharacterized protein; n=3;
Plasmodium (Vinckeia)|Rep: Putative uncharacterized
protein - Plasmodium berghei
Length = 1657
Score = 34.7 bits (76), Expect = 2.9
Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +1
Query: 388 LNKCIVISKEQYIQLASENLFYVDRGVLWLSL-KLSTNYKNKHKRKKQHNTKEHLHKFAF 564
+ K + + + ++ +FY D+ VL S+ + +N KNK ++ K+ N +H K +
Sbjct: 445 IKKIFIFDWDVHHNNGTQEIFYNDKNVLCFSIHRFDSNKKNKKRKSKEINKGKHTKKVSS 504
Query: 565 MTSEIHKKLWADRTADDIENI 627
+ ++ ++K A+ NI
Sbjct: 505 IYNQKNEKKKKTIHANTTSNI 525
>UniRef50_O96218 Cluster: Putative uncharacterized protein PFB0625w;
n=1; Plasmodium falciparum 3D7|Rep: Putative
uncharacterized protein PFB0625w - Plasmodium falciparum
(isolate 3D7)
Length = 669
Score = 34.7 bits (76), Expect = 2.9
Identities = 27/106 (25%), Positives = 52/106 (49%)
Frame = +1
Query: 238 LVFLTIKHRIWYERRLRGAKIMDHFTIKSVPAYIVQSLVKNNLDNNPAVVLNKCIVISKE 417
L F K R++ + G+++ D IKS+P ++++ D + + NK I +
Sbjct: 149 LFFFFNKERMFIKLLRPGSELSDD--IKSIPLHVIEIT-----DFSHGLKKNK-ITDKNK 200
Query: 418 QYIQLASENLFYVDRGVLWLSLKLSTNYKNKHKRKKQHNTKEHLHK 555
+YI ++ N FY ++ ++ L + NY N + + + N K L K
Sbjct: 201 EYIINSTHNNFYTNKELIKLYNNIYNNYNNIYNDEYKKNNKISLQK 246
>UniRef50_A3UAX4 Cluster: Possible CapK protein; n=1; Croceibacter
atlanticus HTCC2559|Rep: Possible CapK protein -
Croceibacter atlanticus HTCC2559
Length = 463
Score = 34.3 bits (75), Expect = 3.8
Identities = 16/68 (23%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Frame = +1
Query: 484 KLSTNYKNKHKRKKQHNTKEHLHKFAFMTSEIHKKLWAD-RTADDIENIRIVPVVGSKLL 660
KL+ + + + Q + ++ + A SE ++KL++D D++NI+ +P++ +L
Sbjct: 42 KLNRSLSREDLLRSQKSRYKNFIEQAIANSEFYRKLYSDIENPQDLDNIQRLPIIDKELF 101
Query: 661 KPDIGFVT 684
+ +I +T
Sbjct: 102 RTNINDIT 109
>UniRef50_UPI00006CEBD5 Cluster: cyclic nucleotide-binding domain
containing protein; n=1; Tetrahymena thermophila
SB210|Rep: cyclic nucleotide-binding domain containing
protein - Tetrahymena thermophila SB210
Length = 1283
Score = 33.9 bits (74), Expect = 5.1
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -1
Query: 580 VFQKS*KQIYVNVLWCCAVFYVCACFYNLCSILKKAKEHLCLRK 449
+ +K +Q + ++L C V YVC CF + SIL + +C +K
Sbjct: 219 ITKKGAEQTFSDILCCTKVEYVCLCFEDYWSILSMYQLRMCEQK 262
>UniRef50_Q6CRB1 Cluster: Similar to sp|Q02773 Saccharomyces
cerevisiae YML091c RPM2 ribonuclease P; n=1;
Kluyveromyces lactis|Rep: Similar to sp|Q02773
Saccharomyces cerevisiae YML091c RPM2 ribonuclease P -
Kluyveromyces lactis (Yeast) (Candida sphaerica)
Length = 1220
Score = 33.9 bits (74), Expect = 5.1
Identities = 24/93 (25%), Positives = 45/93 (48%)
Frame = +1
Query: 298 IMDHFTIKSVPAYIVQSLVKNNLDNNPAVVLNKCIVISKEQYIQLASENLFYVDRGVLWL 477
I H + +VP +V + V N +N + ++ +S+ + +L NLFY G ++
Sbjct: 47 IPQHNILTAVPHPVVVANV--NYNNVERALQSRDAELSRLESEEL---NLFYEKDGEIFY 101
Query: 478 SLKLSTNYKNKHKRKKQHNTKEHLHKFAFMTSE 576
S + NY K HN K+ + F ++++E
Sbjct: 102 SGEHDVNYSKKSSYGANHNKKKRSNSFTYLSNE 134
>UniRef50_Q7REN3 Cluster: Putative uncharacterized protein PY05031;
n=3; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
protein PY05031 - Plasmodium yoelii yoelii
Length = 1123
Score = 33.1 bits (72), Expect = 8.8
Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 7/138 (5%)
Frame = +1
Query: 148 RNMINKLQ--FKLWVLRFCLKIVYPKFNFYTFLVFLTI-KHRIWYERRLRGAKIM--DHF 312
+N+I KL F ++RF +KI+ F Y ++ FL K+ I ++ R M F
Sbjct: 101 QNLIIKLNNIFPQELIRFIVKIISTIFQGYIYVFFLYFTKNTIIHDHRNFPNTSMQCSRF 160
Query: 313 TIKSVPAYIVQSLVKNNL--DNNPAVVLNKCIVISKEQYIQLASENLFYVDRGVLWLSLK 486
S P + + + D+ ++ +NK I+IS++Q + L ++ D S K
Sbjct: 161 VQCSRPVQCSRFVQCSRFVQDDTNSLFINKDILISEKQNLFLLTKKDKPCDETDDNQSTK 220
Query: 487 LSTNYKNKHKRKKQHNTK 540
L TN+ K K +K N K
Sbjct: 221 LDTNFVEK-KNEKNSNIK 237
>UniRef50_Q7R1D8 Cluster: GLP_306_28090_21908; n=2; Giardia lamblia
ATCC 50803|Rep: GLP_306_28090_21908 - Giardia lamblia
ATCC 50803
Length = 2060
Score = 33.1 bits (72), Expect = 8.8
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +1
Query: 532 NTKEHLHKFAFMTSEIHKKLWADRTADDIENIRIVPVVGSKLLKP----DIGFVTEN 690
N KE H F F+ +E HK + RT E +R+ P++ S P D GF+ N
Sbjct: 321 NRKESQHSFDFLRTEYHKLIDQHRTISIYELVRLSPILQSIFTFPHNAKDGGFIGLN 377
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 711,558,938
Number of Sequences: 1657284
Number of extensions: 13190723
Number of successful extensions: 32875
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 31416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32856
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 72553824147
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -