Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_A19
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    27   2.5  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    27   3.3  
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch...    27   3.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   3.3  
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom...    27   4.3  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   5.7  
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.6  
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom...    26   7.6  
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    26   7.6  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   7.6  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   7.6  

>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +1

Query: 334 YIVQSLVKNNLDNNPAVVLNKCIVISKEQYIQLASENLFYVDRGVLWLSLKLSTNYK 504
           Y  + + +NN +N P  +LN   ++SK+ ++Q         D  V+   +KL   +K
Sbjct: 411 YEKEFVEENNPNNIPEGILNVFPILSKDSHLQENQPTDILTDESVIAEDVKLEQVFK 467


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 22/96 (22%), Positives = 41/96 (42%)
 Frame = +1

Query: 310 FTIKSVPAYIVQSLVKNNLDNNPAVVLNKCIVISKEQYIQLASENLFYVDRGVLWLSLKL 489
           FT  S+P+ + +++V   L N   V       + K   +    E L  +D G   L  +L
Sbjct: 593 FTDPSIPSLVERTIVPAELQNEITVSSASLRFLGK--VVARYRETLNLLDHGCSELHHRL 650

Query: 490 STNYKNKHKRKKQHNTKEHLHKFAFMTSEIHKKLWA 597
                 K +R++    + H++K +   S   +K W+
Sbjct: 651 ------KLQREEYERQQNHIYKLSDRISNFREKAWS 680


>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +1

Query: 160 NKLQFKLWVLRFCLKIV 210
           NKLQF++ +LR CL+IV
Sbjct: 115 NKLQFQISLLRCCLRIV 131


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/44 (31%), Positives = 29/44 (65%)
 Frame = +1

Query: 316  IKSVPAYIVQSLVKNNLDNNPAVVLNKCIVISKEQYIQLASENL 447
            +  + A++V+ + + +L+NN  ++LN  +++SK+ Y  L  ENL
Sbjct: 1667 VSDLTAHLVKKIEEPDLENNVKLILN--LILSKD-YGFLLKENL 1707


>SPBC17D1.02 |||diphthamide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 503

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +1

Query: 388 LNKCIVISKEQYIQLASENLFYVDRGVLWLSLKLSTNYKNKHKRKKQHNTKEHLHK 555
           L KC+ I  +Q I L S+  +Y  +  +  SLK +  Y+N ++   +   + +L +
Sbjct: 137 LEKCLTIPLDQNILLVSDTRWYYAQDSILKSLK-TLGYQNVYESHLKERIEPNLEE 191


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 21/62 (33%), Positives = 27/62 (43%)
 Frame = +1

Query: 487 LSTNYKNKHKRKKQHNTKEHLHKFAFMTSEIHKKLWADRTADDIENIRIVPVVGSKLLKP 666
           LS   KNK K+K Q N   HL  F    S I K  +  R    + +    P V + L  P
Sbjct: 440 LSNLLKNKGKKKSQDNQIPHLVGFLGHLSTICKDQYGCRYLQKLLDEN--PKVNASLFFP 497

Query: 667 DI 672
           +I
Sbjct: 498 EI 499


>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 813 KLTSAVMAIFGEHNNEGTRVKSYFNIIKIVQSK 715
           K+    + IFG+ N++   VKS FN+ K+ + +
Sbjct: 29  KIEKFRVLIFGKDNSQDDLVKSVFNLSKLSEKE 61


>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 163

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -3

Query: 416 SLEITMHLFKTTAGLLSKLFFTSDCTMYAGTLLIVK*SIILA 291
           + +I++HL  T   L+  LFF+   ++  G  L+V  SI ++
Sbjct: 60  NFDISVHLMPTVYTLIDYLFFSPPFSLSIGPSLLVYLSIAVS 101


>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 317 LKAYQRTSCNHL*KIIWIIIQLSF*TNALLSLKNSIYS 430
           LK YQ+T      K  W I   S  +N   +LKN+I++
Sbjct: 340 LKRYQKTKTKTRAKSTWKIANKSVYSNLAPTLKNTIHA 377


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 556 IYVNVLWCCAVFYVCACFYNLCSILKKA 473
           + +N+   C  F+  A F+  CS LKK+
Sbjct: 212 LIINIEEACTFFFESAHFFAQCSYLKKS 239


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = -3

Query: 743 SISLKSFNPKHEDMLCNSF---SVTKPMSGLSNLDPTTGTILMFSISSAVLSAHNFLCIS 573
           ++SL S NP +ED+L  +       KP++   ++  + G    F  +S   +    +C+ 
Sbjct: 712 TVSLFSDNPMYEDLLALTTYLGPAKKPVASHEDVKRSGGLFAYFDDASLSSADSCLICLE 771

Query: 572 EVIKANLCK 546
                ++C+
Sbjct: 772 TYTNGDICR 780


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,170,173
Number of Sequences: 5004
Number of extensions: 62159
Number of successful extensions: 182
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)