Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_A19
         (835 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0509 + 3792255-3792661,3792745-3792851,3792949-3793043,379...    32   0.49 
11_04_0374 + 16923063-16923176,16923214-16923363,16923547-16924101     30   2.6  
02_05_1059 + 33815979-33816235,33816467-33816732,33817149-338171...    29   3.5  
01_03_0236 + 14061850-14062062,14062156-14062403,14062484-140628...    28   8.0  

>07_01_0509 +
           3792255-3792661,3792745-3792851,3792949-3793043,
           3793169-3793245,3793334-3793454,3793533-3793592,
           3793672-3793812
          Length = 335

 Score = 32.3 bits (70), Expect = 0.49
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 601 RTADDIENIRIVPVVGSKLLKPDIGFVTENELHNMSSCFGLN 726
           RT  D+EN+R        L K D  F+ EN ++ + S FG N
Sbjct: 292 RTDPDLENLRKTEEFNVLLNKYDESFINENAINAIKSLFGFN 333


>11_04_0374 + 16923063-16923176,16923214-16923363,16923547-16924101
          Length = 272

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 659 SNLDPTTGTILMFSISSAVLSAHNFLCISEVIKANLCKCS 540
           SN +PT  T+L F++S  +      LC SE   A   KCS
Sbjct: 64  SNKEPTITTVLHFTVSDVLYLVTTELCSSEQKVAIPTKCS 103


>02_05_1059 + 33815979-33816235,33816467-33816732,33817149-33817192,
            33817363-33817539,33817638-33817964,33818067-33818192,
            33818518-33818622,33818815-33820125,33820221-33820382,
            33820416-33820517,33820549-33821272,33821358-33821451,
            33821824-33821986
          Length = 1285

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = +1

Query: 388  LNKCIVISKEQYIQLASENLFYVDRGVLWLSLKLSTNYKNKHKRKKQHN 534
            LNK +    ++ ++  +  +F+  + +L  S+KL  + K KHKR K+H+
Sbjct: 1029 LNKKMNCKSKRQVKYPAVRMFFGPKQLLLASVKL--HKKRKHKRSKKHH 1075


>01_03_0236 +
           14061850-14062062,14062156-14062403,14062484-14062811,
           14062930-14063175
          Length = 344

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
 Frame = +1

Query: 175 KLWVLRFCLKIVYPKFNFYTFLVFLTIKHRIWYERRLRGAKIMDHFT--IKSVPAYIVQS 348
           +L+V+    K+ +    F   L       R W  +  +    +D ++  +KS+  +++ +
Sbjct: 115 QLFVVSEDQKLDWADILFLNTLPVQNRNFRFWPNQLAKFRSALDKYSAAVKSIVDFLLVT 174

Query: 349 LVKNNLDNNPAVVLNKC 399
            V NNL  +P V+ NKC
Sbjct: 175 -VANNLGVDPEVIANKC 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,819,806
Number of Sequences: 37544
Number of extensions: 313027
Number of successful extensions: 699
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)