Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_A17
(848 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U91543-1|AAC39923.1| 2000|Homo sapiens zinc-finger helicase prot... 32 2.3
BC110648-1|AAI10649.1| 661|Homo sapiens CHD3 protein protein. 32 2.3
AF006515-1|AAB87383.1| 1944|Homo sapiens CHD3 protein. 32 2.3
AL358789-2|CAI14913.1| 553|Homo sapiens mucolipin 3 protein. 31 5.3
AL358789-1|CAI14914.1| 497|Homo sapiens mucolipin 3 protein. 31 5.3
AK001868-1|BAA91951.1| 497|Homo sapiens protein ( Homo sapiens ... 31 5.3
AF475085-1|AAL84622.1| 553|Homo sapiens mucolipin-3 protein. 31 5.3
BC100937-1|AAI00938.1| 301|Homo sapiens solute carrier family 2... 30 9.2
>U91543-1|AAC39923.1| 2000|Homo sapiens zinc-finger helicase protein.
Length = 2000
Score = 32.3 bits (70), Expect = 2.3
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Frame = +1
Query: 106 PSQSAQXXHLKQHXADCLAEXXADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKD 285
P+ A H + A+CLAE Q ++K K N L K L L + K
Sbjct: 1822 PAHPAMALHARFAEAECLAES---HQHLSKESLAGNKPANAVLHK-VLNQLEELLSDMKA 1877
Query: 286 GKFKKDVALAKVPNAEDKLKV-EKLIDACLANKGNSPHQT 402
+ L+++P +L++ E+ I + LA+KG PH T
Sbjct: 1878 DVTRLPATLSRIPPIAARLQMSERSILSRLASKGTEPHPT 1917
>BC110648-1|AAI10649.1| 661|Homo sapiens CHD3 protein protein.
Length = 661
Score = 32.3 bits (70), Expect = 2.3
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Frame = +1
Query: 106 PSQSAQXXHLKQHXADCLAEXXADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKD 285
P+ A H + A+CLAE Q ++K K N L K L L + K
Sbjct: 483 PAHPAMALHARFAEAECLAES---HQHLSKESLAGNKPANAVLHK-VLNQLEELLSDMKA 538
Query: 286 GKFKKDVALAKVPNAEDKLKV-EKLIDACLANKGNSPHQT 402
+ L+++P +L++ E+ I + LA+KG PH T
Sbjct: 539 DVTRLPATLSRIPPIAARLQMSERSILSRLASKGTEPHPT 578
>AF006515-1|AAB87383.1| 1944|Homo sapiens CHD3 protein.
Length = 1944
Score = 32.3 bits (70), Expect = 2.3
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Frame = +1
Query: 106 PSQSAQXXHLKQHXADCLAEXXADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKD 285
P+ A H + A+CLAE Q ++K K N L K L L + K
Sbjct: 1788 PAHPAMALHARFAEAECLAES---HQHLSKESLAGNKPANAVLHK-VLNQLEELLSDMKA 1843
Query: 286 GKFKKDVALAKVPNAEDKLKV-EKLIDACLANKGNSPHQT 402
+ L+++P +L++ E+ I + LA+KG PH T
Sbjct: 1844 DVTRLPATLSRIPPIAARLQMSERSILSRLASKGTEPHPT 1883
>AL358789-2|CAI14913.1| 553|Homo sapiens mucolipin 3 protein.
Length = 553
Score = 31.1 bits (67), Expect = 5.3
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +3
Query: 537 CHDYIGEYCNLVWCYYSNFNLYLFGKFCFVIITYSIENQNLIFFCVHHSFVYLV*CF 707
C +G LVW + L F K+ +I+T N+I FC + +YL CF
Sbjct: 373 CSILLGTSTMLVWLGVIRY-LGFFAKYNLLILTLQAALPNVIRFCCCAAMIYLGYCF 428
>AL358789-1|CAI14914.1| 497|Homo sapiens mucolipin 3 protein.
Length = 497
Score = 31.1 bits (67), Expect = 5.3
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +3
Query: 537 CHDYIGEYCNLVWCYYSNFNLYLFGKFCFVIITYSIENQNLIFFCVHHSFVYLV*CF 707
C +G LVW + L F K+ +I+T N+I FC + +YL CF
Sbjct: 317 CSILLGTSTMLVWLGVIRY-LGFFAKYNLLILTLQAALPNVIRFCCCAAMIYLGYCF 372
>AK001868-1|BAA91951.1| 497|Homo sapiens protein ( Homo sapiens
cDNA FLJ11006 fis, clone PLACE1003045. ).
Length = 497
Score = 31.1 bits (67), Expect = 5.3
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +3
Query: 537 CHDYIGEYCNLVWCYYSNFNLYLFGKFCFVIITYSIENQNLIFFCVHHSFVYLV*CF 707
C +G LVW + L F K+ +I+T N+I FC + +YL CF
Sbjct: 317 CSILLGTSTMLVWLGVIRY-LGFFAKYNLLILTLQAALPNVIRFCCCAAMIYLGYCF 372
>AF475085-1|AAL84622.1| 553|Homo sapiens mucolipin-3 protein.
Length = 553
Score = 31.1 bits (67), Expect = 5.3
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +3
Query: 537 CHDYIGEYCNLVWCYYSNFNLYLFGKFCFVIITYSIENQNLIFFCVHHSFVYLV*CF 707
C +G LVW + L F K+ +I+T N+I FC + +YL CF
Sbjct: 373 CSILLGTSTMLVWLGVIRY-LGFFAKYNLLILTLQAALPNVIRFCCCAAMIYLGYCF 428
>BC100937-1|AAI00938.1| 301|Homo sapiens solute carrier family 25
(mitochondrial carrier; ornithine transporter) member
protein.
Length = 301
Score = 30.3 bits (65), Expect = 9.2
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 307 ALAKVPNAEDKLKVEKLIDACLANKGNSPHQTAWNYVKCYHEKD 438
ALA P K +++ + + ++ K H T W+ VKC +KD
Sbjct: 121 ALALCPTELVKCRLQTMYEMEMSGKIAKSHNTIWSVVKCILKKD 164
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,122,271
Number of Sequences: 237096
Number of extensions: 2000998
Number of successful extensions: 3428
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3425
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10761200974
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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