Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_A15
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    28   1.2  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    27   1.6  
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb...    27   2.8  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    26   5.0  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    26   5.0  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    25   8.7  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    25   8.7  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    25   8.7  

>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
 Frame = +2

Query: 314 KGLNKISMKSKLLE-ELTALLKCNERHLPDAQLQERRPNLYEELSSIF--VCVPEERYGT 484
           K + +++M   L+  +L  L K N  H+P+    E   N+Y  LS+I+  +  P   +  
Sbjct: 552 KDMGELNMIIDLIRNDLHQLAKKNSVHVPELYSVEEHSNVYSLLSNIYGRIESPITAWDV 611

Query: 485 RAQTILLLTKTGHLEVLEISMKSPIDK 565
            +++    + TG  ++  + M  P+++
Sbjct: 612 LSKSFPPGSMTGAPKLRSVRMLEPLEQ 638


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +2

Query: 296 KMYDICKGLNKISMKSKLLEELTAL--LKCNERHLPDAQLQERRPNLYEELSSIF 454
           K+ D  K LNK+  K +LLE   AL  L C  R +    L++  PN +  L  +F
Sbjct: 13  KLPDSSKNLNKLRWKFRLLESQFALYSLPCQLRFVHYNNLED--PNSFNGLLYLF 65


>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 299 MYDICKGLNKISMKSKLLEELTALLKCN 382
           M D C+ L+ I      LEE + L  CN
Sbjct: 122 MLDCCRSLSDIEKDGVTLEEFSCLANCN 149


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 275 KVEAGLTKMYDICKGLNKISMKSKL 349
           KV+  L ++Y I K  NK+S  SKL
Sbjct: 540 KVQNDLARIYRIIKSQNKMSRSSKL 564


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1427

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -3

Query: 372  KSAVNSSKSLLFIEILLSPLQISYILVRPASTFFNGISG 256
            K  +   +++ FI+ ++ PL IS+ + R  +   +GISG
Sbjct: 1057 KEKIFEHENMAFIDDMIQPLYISFAINRWLAIRTDGISG 1095


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1085

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = +2

Query: 245  GNSLPDMPLKKVEAGLTKMYDICKGLNKISMKSKLLE--ELTALLKCNERHLPDAQLQER 418
            G+ L D   K + +    MYD C  L +   +   LE   L  LL+  + H  D   +E+
Sbjct: 874  GSQLLDSKSKAIHSNSRSMYDHCLALAESQKQGVNLEVQTLDRLLQKVKEHSED-NTKEK 932

Query: 419  RPNLYEELSSI 451
               L + L S+
Sbjct: 933  HQQLLDLLESL 943


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -3

Query: 429  KLGLRSCSWASGRCLSLHFKSAVNSSKSLLFIEILLSPLQISYILVRPASTFFN 268
            KLG R+ +   GR   L     +N+   LL +  LL+P       +RP +  +N
Sbjct: 1242 KLGFRTINEMVGRSDKLKVAEPINNKSKLLDLTPLLTPA----FTLRPGAATYN 1291


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 251 SLPDMPLKKVEAGLTKMYDIC 313
           +LP  P K +EA L + YD+C
Sbjct: 752 NLPMNPHKSLEASLYEKYDLC 772


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,519,653
Number of Sequences: 5004
Number of extensions: 52583
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)