Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_A15
         (614 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132853-5|CAB60443.1|  279|Caenorhabditis elegans Hypothetical ...    71   7e-13
Z78016-1|CAB01439.1|  276|Caenorhabditis elegans Hypothetical pr...    48   5e-06
AC090999-2|AAK26145.1|  139|Caenorhabditis elegans Hypothetical ...    31   0.86 
AF016419-8|AAG24053.1|  293|Caenorhabditis elegans Serpentine re...    28   4.6  
AL032646-7|CAA21680.1|  485|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AL132853-5|CAB60443.1|  279|Caenorhabditis elegans Hypothetical
           protein Y80D3A.9 protein.
          Length = 279

 Score = 70.9 bits (166), Expect = 7e-13
 Identities = 41/126 (32%), Positives = 68/126 (53%), Gaps = 4/126 (3%)
 Frame = +2

Query: 242 FGNSLPDMPLKKVEAGLTKMYDICKGLNKISMKSKLLEELTALLKCNERHLPDAQLQERR 421
           F NS P +P KK E GL    +  K  +++S++ ++ E+L  +  C     PD Q++ + 
Sbjct: 154 FSNSPPHVPFKKTEFGLKMFEEKLKNTDEMSVE-QIFEKLFEIATCRTSCFPDDQIRAQT 212

Query: 422 ---PNLYEELSSIFVCVPE-ERYGTRAQTILLLTKTGHLEVLEISMKSPIDKIEPKWEKH 589
               ++Y+ L+SIFV  PE  RYGTR+ T++++ + G + VL+  M+      E  W   
Sbjct: 213 GFPEHIYKPLTSIFVRFPEIRRYGTRSHTLIVVDQNGQVTVLDRRMEPAESVEESTWHDE 272

Query: 590 KYQFNL 607
           K  F L
Sbjct: 273 KITFKL 278



 Score = 35.5 bits (78), Expect = 0.030
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +1

Query: 34  NAKSRGKIVAEFVKSKKXAVSYVQXMKSYFEXCNNFIFVAMDFGNTTPV--INSFTN 198
           NA SRG IV E++KS      + + ++   E  N F FV ++   TT +  + S TN
Sbjct: 80  NAPSRGGIVNEYLKSGTDTTKFYENLRENAEKFNGFQFVGVEKNPTTGLFHVQSLTN 136


>Z78016-1|CAB01439.1|  276|Caenorhabditis elegans Hypothetical
           protein R186.1 protein.
          Length = 276

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
 Frame = +2

Query: 248 NSLPDMPLKKVEAGLTKMYDICKGLNKISMKSKLLEELTALLKCNERHLPDAQLQERRPN 427
           NS P  P +K   G   + +  +  ++ S+  ++ E+L ++ K   +  PDAQLQ +  N
Sbjct: 154 NSPPTKPYQKAVQGKKLLREHLENSDQFSV-DQIFEKLLSIAKNTTQWYPDAQLQYQTQN 212

Query: 428 LYE---ELSSIFVCVPE--ERYGTRAQTILLLTKTGHLEVLE 538
           + E    LS+IF+  PE    YGTR  T++ + +   + +LE
Sbjct: 213 VEEYNRPLSAIFIKYPEGTRMYGTRCHTLITVDQKDKINILE 254


>AC090999-2|AAK26145.1|  139|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.9 protein.
          Length = 139

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 402 PNYKNVGLIYMKN*VLYLFVYLKKDMEQGRKLYCFSLK 515
           P Y+NV L  +K+ ++YLF+YL + +    K    ++K
Sbjct: 82  PYYRNVTLNTIKSPIIYLFIYLLRSLRDVMKTNYINIK 119


>AF016419-8|AAG24053.1|  293|Caenorhabditis elegans Serpentine
           receptor, class x protein6 protein.
          Length = 293

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 219 CCYFVCDIREAIYDWRGVSKVHCYKNEIITXFKI 118
           CC  + DI    Y +  +  VH Y N+I+  + +
Sbjct: 134 CCVLIVDIDIMSYMFLSIEGVHSYSNDILLVYDV 167


>AL032646-7|CAA21680.1|  485|Caenorhabditis elegans Hypothetical
           protein Y54E2A.8 protein.
          Length = 485

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
 Frame = +2

Query: 230 LXLGFGNSLPDMPLKKVEAGLTKMYDICKGLNKISMKSK----LLEELTALLKCNERHLP 397
           L + FGNSL   P K +E  + K     K   K  M++K    L EE  AL +  +  + 
Sbjct: 217 LRINFGNSLKIPPRKIIEKPVEKAPPKAKMTRKRMMRAKHEKRLREEQIALEESKKEQIY 276

Query: 398 DAQLQERRPNLYEEL 442
           + + ++R+  L +EL
Sbjct: 277 ERK-KQRKEKLKKEL 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,428,327
Number of Sequences: 27780
Number of extensions: 277414
Number of successful extensions: 878
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)