Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_A14
         (416 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1407 - 33345230-33345372,33345492-33345626,33346559-33346904     28   3.5  
03_05_0627 - 26240673-26241318,26241713-26242536                       27   8.0  

>04_04_1407 - 33345230-33345372,33345492-33345626,33346559-33346904
          Length = 207

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -3

Query: 102 GHSAGDGSPLATPAGCESELGXGHDEASQNKEEK 1
           G  AGDGS        E   G G DE  + +EEK
Sbjct: 62  GGGAGDGSGSGGGGDSEKPRGGGGDEEGEGEEEK 95


>03_05_0627 - 26240673-26241318,26241713-26242536
          Length = 489

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
 Frame = -2

Query: 181 ASGIAGVFQLHX----E*VYKXTPRLXRACRTQCRRWQPA 74
           A+  A   QLH     E + +  PR   ACR  C+ W+ A
Sbjct: 21  AAAAAAALQLHGDVLGEVLRRLAPRWLAACRCVCKAWRDA 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,719,706
Number of Sequences: 37544
Number of extensions: 161514
Number of successful extensions: 509
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)