Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_A13
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...   121   9e-29
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   2.6  
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    27   3.4  
SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta 5-->4-i...    26   4.5  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    25   7.9  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score =  121 bits (292), Expect = 9e-29
 Identities = 60/146 (41%), Positives = 86/146 (58%), Gaps = 5/146 (3%)
 Frame = +3

Query: 171 RFLLEGQIIELI*TIIPAFTLIFIALPSLRLXYLLDELNNPLITLKSIGHQ*Y*RYEYSD 350
           ++   G I+E I T+IPA  LI +ALPS +L YLLDE+  P +T+K+IG Q +  YE +D
Sbjct: 69  KYTTHGSIVEFIWTLIPALILILVALPSFKLLYLLDEVQKPSMTVKAIGRQWFWSYELND 128

Query: 351 F-----NNIEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPS 515
           F       + FDSY++P  +++    R L+VD               T+ DVIHS  +PS
Sbjct: 129 FVTNENEPVSFDSYMVPEEDLEEGSLRQLEVDNRLVLPIDTRIRLILTSGDVIHSWAVPS 188

Query: 516 LGVKVDANPGRLNQTNFFINRPGIFF 593
           LG+K D  P RLNQ +  I+R G+F+
Sbjct: 189 LGIKCDCIPSRLNQVSLSIDREGLFY 214



 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 19/34 (55%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
 Frame = +1

Query: 553 IKQTSLLIDLE-FFFGQCSEICGANHSFIPIVIE 651
           + Q SL ID E  F+GQCSE+CG  HS +PIV++
Sbjct: 200 LNQVSLSIDREGLFYGQCSELCGVLHSSMPIVVQ 233


>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 286

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +3

Query: 234 IFIALPS--LRLXYLLDELNNPLITLKSIGHQ*Y*RYEYSDFNNIEFDSYIIPSNEIKNN 407
           +F +LP   LRL +LL   +N  +T +S+ H+   R     F  I+F   ++P + I + 
Sbjct: 36  VFESLPLEVLRLIFLLSNNSNLAVTSRSLRHRLSLRNNTPIFMPIDFTLSMVPKSIILSI 95

Query: 408 EFRLL 422
           +  LL
Sbjct: 96  QRGLL 100


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +3

Query: 246 LPSLRLXYLLDELNN-PLITLKS 311
           LPS+RL Y+LD L   PL+ +K+
Sbjct: 430 LPSVRLSYILDTLEECPLLNIKT 452


>SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta
           5-->4-isomerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 340

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 528 VDANPGRLNQTNFFINRPGIFFWSMFRNLWS 620
           + +NP    Q  F  N   I+FW   R +W+
Sbjct: 225 LSSNPTANGQVFFITNGQVIYFWDFARAIWA 255


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -3

Query: 457 LFIGKIIRLSTSNSRNSLFFISLDGIIYESNSILLKSE 344
           LF+    R +T  SRN+L+FI LD     SN   + SE
Sbjct: 165 LFVRHWDRWNTG-SRNTLYFIELDKKTENSNYFEISSE 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,126,091
Number of Sequences: 5004
Number of extensions: 36027
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)