Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_A12
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom...    55   1e-08
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    27   2.4  
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi...    27   3.1  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    27   4.1  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   4.1  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    27   4.1  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    26   5.5  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   7.2  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    25   9.5  
SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces...    25   9.5  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    25   9.5  

>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 163

 Score = 55.2 bits (127), Expect = 1e-08
 Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
 Frame = +3

Query: 333 RIKDILFSALAFPLSMFVGITFWGIYAIDRELILPRSLDPYFPTWLNHVMHTNIMAFILI 512
           ++K+IL   +  PL   V I +W I + DR L++P+      P   +  +H     + LI
Sbjct: 17  KLKNILLYIVC-PLETIVSILYWSIVSYDRSLLIPKDRPVPLPLNFDISVHLMPTVYTLI 75

Query: 513 DLLTSFRMYPRKKIGLSVL--CTYMLCYMVWIHVIYFKTGSWVYPILNILNWPLRVVFYL 686
           D L  F       IG S+L   +  + YM+W+   Y     + YPIL IL+   + +FY 
Sbjct: 76  DYL-FFSPPFSLSIGPSLLVYLSIAVSYMLWVEKCYQMNKFYAYPILAILDPIKKTIFYT 134

Query: 687 VCLGLVCSLY 716
           V   +  S Y
Sbjct: 135 VASIISFSCY 144


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = +3

Query: 339 KDILFSALAFPLSMFVGITFWGIYAIDRELILPRSLDPYFPTWLNHVMHTNIMAFILIDL 518
           K ILFS L F   +++   FW +      L+       YFP W  H+  +   A IL +L
Sbjct: 273 KQILFSLLYFSSEVYLSFVFWSVLTSLGLLVW------YFPLW--HMGISGYEACILFEL 324


>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
           Tim44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 427

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -3

Query: 403 PQNVIPTNIDSGKAKALNNISFMRLIKGFSDGVGSLFPNKSFKSANVKYK 254
           PQ+ I   +D+ +A+   +      +K   D  GSL  + +FK A   Y+
Sbjct: 32  PQSPIKVFMDTFRAELKKSQELQDSVKALQDSSGSLSESDTFKKARDAYE 81


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 19/78 (24%), Positives = 34/78 (43%)
 Frame = +3

Query: 429 ILPRSLDPYFPTWLNHVMHTNIMAFILIDLLTSFRMYPRKKIGLSVLCTYMLCYMVWIHV 608
           I+ + ++ YF    N +     + F L   L+S   +   KI    +  +    +++IH+
Sbjct: 356 IVEKFMNVYFKGLSNIISSFAFIGFTLFATLSSL-FFKVLKIHRRPIIVFGSLSIIFIHI 414

Query: 609 IYFKTGSWVYPILNILNW 662
             FK  SWV    N+  W
Sbjct: 415 YCFKITSWV----NLYGW 428


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 381 FVGITFWGIYAIDRELILPRSLD 449
           ++  TFW IY +   LILP SLD
Sbjct: 317 YITSTFWIIYLLYVWLILPESLD 339


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 615 FKTGSWVYPILNILNWPLRVVFYL 686
           F  GSW  P+LN L++P   V +L
Sbjct: 293 FVLGSWKSPLLNALHYPFPSVGFL 316


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 495 MAFILIDLLTS-FRMYPRKKIGLSVLCTYMLCYMVWIHVIYF 617
           + FI+  +L+  F++     + LS LCT+  C M  I + YF
Sbjct: 469 LVFIVSVILSIYFQLGSTYWVTLSYLCTFTCCIMTIIRINYF 510


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 5   LSISTCSFMFVTHKTCPSSSSI 70
           L+I+T +F F+T K  PSS S+
Sbjct: 125 LTINTTTFKFLTRKNNPSSMSL 146


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +3

Query: 249 QTLYF---TLALLNDLFGNNEPTPSEKPLIRRIKDIL 350
           QTL F      L++D FGN     ++ PL+   KDIL
Sbjct: 408 QTLSFYESNYGLVDDFFGNELDGLNDSPLLLNKKDIL 444


>SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 345 ILFSALAFPLSMFVGITFWGIYAIDRELILPRSLDPYFPTWLNHVMHTNI 494
           ++ S  AFPLS F        Y   +++    +   + P  LN V+HTN+
Sbjct: 12  LILSDTAFPLSSFSYSYGLESYLSHQQVRDVNAFFNFLPLSLNSVLHTNL 61


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 150 YYXQVHVXVPSTSAIVTPYAGKMKYLTHLNAIMQTLYFTLA 272
           YY  VH  VP+ S ++T     + +L  LN ++    F  A
Sbjct: 472 YYTYVHWIVPTLSGLLTGAGILLIFLQCLNYLLDAYLFRAA 512


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,300,790
Number of Sequences: 5004
Number of extensions: 70108
Number of successful extensions: 218
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)