Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_A12
         (804 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0460 - 8654283-8654302,8654669-8654847,8654940-8655125,865...    31   0.81 
03_02_0248 + 6783643-6783794,6784912-6784947,6785977-6785998,678...    29   4.3  
09_02_0096 - 4221935-4222231                                           29   5.7  
03_02_0932 + 12495700-12495738,12495859-12496093,12496178-124964...    28   7.6  
11_04_0470 - 18092681-18092695,18092725-18092811,18093528-180935...    28   10.0 
08_02_1116 + 24400212-24400401,24402258-24402576,24403297-244034...    28   10.0 

>03_02_0460 -
           8654283-8654302,8654669-8654847,8654940-8655125,
           8655626-8655781,8656223-8656431,8657254-8657358
          Length = 284

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 327 IRRIKDILFSALAFPLSMFVGITFWGIYAIDRELILPRSLDP--YFPTWLNHVMHTNIMA 500
           +R+ K + FS   + L+ +  +  W +  I +E   P SLD   YF  W N  M +++M 
Sbjct: 54  VRQAKIVKFSESIWKLTYYGSVQAWVLLIIKQE---PWSLDTMQYFEGWPNQYMTSSLML 110

Query: 501 FIL 509
           F +
Sbjct: 111 FYM 113


>03_02_0248 +
           6783643-6783794,6784912-6784947,6785977-6785998,
           6786368-6786440,6786541-6786638
          Length = 126

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = +3

Query: 585 CYMVWIHVIYFKTGSWVYPILNILNWPLRVVFYLVCLGLVCSLYSLGEKFNKLVWSKEVX 764
           C M +   + ++ G   + IL  ++WPL  ++ L+        YS+G   +    S E+ 
Sbjct: 9   CQMAFGFKMLYEEGQGDFVILFFIDWPLVDIYELI--------YSIGTTKSSSTGSLEIH 60

Query: 765 QTVKSGKK 788
           Q++  G K
Sbjct: 61  QSISDGSK 68


>09_02_0096 - 4221935-4222231
          Length = 98

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +3

Query: 324 LIRRIKDILFSALAFPLSMFVGITFWGIYAIDRELILPRSLDPYFPTWLN 473
           LIR +  I+ +A++F L +   +TFW I  I  + +     DPY  T LN
Sbjct: 6   LIRNVVGIVGNAISFGLFLSPVLTFWRI--IKEKDMKYFKADPYLATLLN 53


>03_02_0932 +
           12495700-12495738,12495859-12496093,12496178-12496423,
           12496519-12496572,12497329-12497589,12497750-12497802,
           12497893-12498016,12498147-12498401,12498798-12499888,
           12500001-12500007,12500316-12500445,12500617-12500731,
           12500783-12500853,12501246-12501354,12501550-12501738,
           12502519-12502644,12503048-12503563
          Length = 1206

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
 Frame = +2

Query: 398 LGHIRHRQ-RAHFTKKLRP--IFSYMAESCNAHKHNGIYSN*FVNILQNVS*EENWTICT 568
           LGH  +   +  FT  + P  I +YM ++    KH+  YSN  V     V  +  W +  
Sbjct: 287 LGHFSYSAIQLAFTSLVYPALILAYMGQAAYLSKHHDFYSNSQVGFYIAVPDKVRWPVLV 346

Query: 569 LYIYVVLHG 595
           L I   + G
Sbjct: 347 LAILASVVG 355


>11_04_0470 -
           18092681-18092695,18092725-18092811,18093528-18093593,
           18093696-18093740,18093850-18093903,18093987-18094082,
           18094161-18094241,18095634-18095714,18095798-18095884,
           18095976-18096074,18096644-18096769,18098162-18098248,
           18098321-18098389,18098711-18098806,18099053-18099169,
           18099710-18099790,18099873-18100010,18100307-18100580,
           18100735-18100830,18101612-18101757,18102883-18103141,
           18103434-18103537,18103623-18103748,18103872-18103982,
           18104200-18104304
          Length = 881

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 485 VHYMIQPCRKIWV*ASW 435
           +HY+++P  KIWV + W
Sbjct: 157 LHYLLKPLNKIWVQSEW 173


>08_02_1116 +
           24400212-24400401,24402258-24402576,24403297-24403480,
           24403752-24403971,24404282-24404427,24404533-24404571,
           24404990-24405061
          Length = 389

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 441 SLDPYFPTWLNHVMHTNIMAFILIDLLTSFRMYP 542
           S  P    W  HV    ++ +I +DL  SF  YP
Sbjct: 109 SSSPASHVWARHVKDWGLIFYIRVDLQGSFHTYP 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,958,386
Number of Sequences: 37544
Number of extensions: 398100
Number of successful extensions: 830
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)