Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_A10
         (731 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0466 + 9599389-9599662,9600324-9600643,9600950-9601186,960...    30   2.2  
01_01_0235 - 1964981-1964997,1965545-1966325                           29   2.9  
09_02_0317 + 7186148-7186243,7186406-7186572,7186766-7186878,718...    29   5.0  
06_02_0096 - 11683368-11684581,11684705-11684773,11685356-116854...    29   5.0  
05_04_0029 - 17321378-17321905,17323348-17323525,17323531-173239...    29   5.0  
02_03_0262 + 17015383-17015619,17017932-17018879                       29   5.0  
04_04_0534 + 26071227-26071811                                         28   6.6  

>09_02_0466 +
           9599389-9599662,9600324-9600643,9600950-9601186,
           9601278-9601445,9601778-9601966
          Length = 395

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 486 LRSVLREDIDALVKHVYIVKR-KFAGAPVASLLVDRHVVIAVDHS 355
           L  +L+  I+ + KHV ++ R K  G P + LL   H  +++ H+
Sbjct: 244 LELLLQSGIELMGKHVTVIGRSKVVGLPTSLLLQRHHATVSIIHA 288


>01_01_0235 - 1964981-1964997,1965545-1966325
          Length = 265

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +1

Query: 112 VCLGCICQAISGCKQG-LQCEGETCGLFRITWGYWADAGKPTINGLSPDAP-DAYSSC 279
           +CL  +   +  C +   +CE  TCG   + + +W   G P  N  +  +P  A +SC
Sbjct: 6   LCLPLLASLLLLCHRARAECEPATCGNLTVRYPFW--LGGPNFNQSNQSSPSSALASC 61


>09_02_0317 +
           7186148-7186243,7186406-7186572,7186766-7186878,
           7187059-7187133,7187215-7187328,7187545-7187612,
           7187690-7187773,7187966-7188019,7188104-7188184,
           7188279-7188372,7188501-7188574,7188656-7188766,
           7188976-7189032,7189119-7189223,7189584-7189687,
           7190021-7190186,7190279-7190416
          Length = 566

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 229 PTINGLSPDAPDAYSSCTVDPYCAAQTVQNYMRRFGQ 339
           P + G +       S+ T+DP CA   VQ +   FGQ
Sbjct: 29  PCLEGKAIRVEFGDSTTTIDPTCANMVVQEFPNTFGQ 65


>06_02_0096 -
           11683368-11684581,11684705-11684773,11685356-11685412,
           11685553-11685609,11685758-11685817,11686770-11686893
          Length = 526

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = -3

Query: 441 VYIVKRKFAG-APVASLLVDRHVVIAVDHSVAVAVLAKSSHVVLDGLRGAVRVYSAARVG 265
           +YI  R+  G   + +   DR       H  A+A L+    V LD    AVR + +ARVG
Sbjct: 251 LYITAREHGGRVQLLAANYDRRWTAKYQH--ALAALSMYPVVDLDA-DAAVRCFPSARVG 307

Query: 264 IRSVR*ETIDSGFSG 220
           + S R   ID+  +G
Sbjct: 308 VESHRVLGIDTPLTG 322


>05_04_0029 -
           17321378-17321905,17323348-17323525,17323531-17323910,
           17323936-17324052
          Length = 400

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +1

Query: 358 VVNCYDYMAIH-KKGGYGCTGELPFNYVNVFNQCINVFAQYRS 483
           +V C  Y+ I+  +GG GC        + V   C+NV   Y S
Sbjct: 350 LVPCLSYLKIYMSRGGVGCFERTMIVGILVIGVCVNVVGTYTS 392


>02_03_0262 + 17015383-17015619,17017932-17018879
          Length = 394

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = -2

Query: 88  ETSAKQTPATNSNAQNLSTAEAIAA 14
           ++S+K+TPA  S+AQN S A A AA
Sbjct: 230 KSSSKRTPAGESSAQNNSIAAAAAA 254


>04_04_0534 + 26071227-26071811
          Length = 194

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +2

Query: 275 AAL*TRTAPRRPSKTT*EDLARTATATEWSTAMTTWRSTRREATGAPA 418
           A L TR   RRP++   +   R   A  W   +TTWR T  +  G P+
Sbjct: 90  ARLATRRRGRRPARRRRDCAWRRPAAWRW---LTTWRRTASKPDGYPS 134


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,096,373
Number of Sequences: 37544
Number of extensions: 437497
Number of successful extensions: 1143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)