Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_F_A10
(731 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41547-6|AAA83197.1| 139|Caenorhabditis elegans Hypothetical pr... 71 8e-13
AF067611-3|AAC19179.1| 139|Caenorhabditis elegans Hypothetical ... 66 2e-11
AF067611-4|AAC19181.1| 139|Caenorhabditis elegans Hypothetical ... 62 5e-10
AF067611-5|AAC19180.1| 145|Caenorhabditis elegans Hypothetical ... 40 0.002
U58747-4|AAF99902.2| 159|Caenorhabditis elegans Hypothetical pr... 36 0.039
X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein. 32 0.36
Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z81479-10|CAB03945.2| 324|Caenorhabditis elegans Hypothetical p... 29 4.5
U40935-7|AAA81691.3| 338|Caenorhabditis elegans C.elegans homeo... 29 4.5
U01303-1|AAC46471.1| 338|Caenorhabditis elegans Ceh-20 protein. 29 4.5
AY552606-1|AAS89253.1| 324|Caenorhabditis elegans heparan sulfa... 29 4.5
AF000264-2|AAC71121.1| 761|Caenorhabditis elegans Half transpor... 29 4.5
Z83237-2|CAB05789.1| 258|Caenorhabditis elegans Hypothetical pr... 28 5.9
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 28 5.9
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 28 5.9
Z37139-9|CAA85493.1| 396|Caenorhabditis elegans Hypothetical pr... 28 7.8
>U41547-6|AAA83197.1| 139|Caenorhabditis elegans Hypothetical
protein F22A3.6a protein.
Length = 139
Score = 70.9 bits (166), Expect = 8e-13
Identities = 42/119 (35%), Positives = 55/119 (46%), Gaps = 5/119 (4%)
Frame = +1
Query: 115 CLGCICQAISGCKQGLQCEGE----TCGLFRITWGYWADAGKPTIN-GLSPDAPDAYSSC 279
CL CIC SGCK + C + +CG ++I GY+ D G+PT G + +A A+ C
Sbjct: 20 CLHCICMRESGCKP-IGCHMDVGSLSCGYYQIKIGYYEDCGQPTKKAGETTEA--AWKRC 76
Query: 280 TVDPYCAAQTVQNYMRRFGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNVFNQC 456
D CA V+NY R+ CNG G+ C H G GC Y N C
Sbjct: 77 ADDLNCATTCVENYYNRYKSQCNGLGMGACQIMSRNHNGGPRGCHNANTLAYWNGVKSC 135
>AF067611-3|AAC19179.1| 139|Caenorhabditis elegans Hypothetical
protein C45G7.3 protein.
Length = 139
Score = 66.5 bits (155), Expect = 2e-11
Identities = 39/118 (33%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Frame = +1
Query: 115 CLGCICQAISGCKQ---GLQCEGETCGLFRITWGYWADAGKPTI-NGLSPDAPDAYSSCT 282
CL CIC SGCK + +CG ++I Y+ D G+PT +G + +A A+ C
Sbjct: 20 CLHCICMRESGCKPIGCNMDVGSLSCGYYQIKLPYYEDCGQPTKKSGETTEA--AWKRCA 77
Query: 283 VDPYCAAQTVQNYMRRFGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNVFNQC 456
D CA V+NY R+ C G G C H G GC Y N C
Sbjct: 78 NDLSCATTCVENYYNRYKSQCAGTGQGACEVMARNHNGGPQGCKHSGTLGYWNGIKSC 135
>AF067611-4|AAC19181.1| 139|Caenorhabditis elegans Hypothetical
protein C45G7.2 protein.
Length = 139
Score = 61.7 bits (143), Expect = 5e-10
Identities = 38/119 (31%), Positives = 52/119 (43%), Gaps = 5/119 (4%)
Frame = +1
Query: 115 CLGCICQAISGCKQGLQCEGE----TCGLFRITWGYWADAGKP-TINGLSPDAPDAYSSC 279
CL CIC SGCK + C + +CG ++I Y+ D G+P +G S + A+ C
Sbjct: 20 CLHCICMRESGCKP-IGCHMDVGSLSCGYYQIKIPYYEDCGQPGKKHGESTEV--AWKRC 76
Query: 280 TVDPYCAAQTVQNYMRRFGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNVFNQC 456
D CA V+NY R+ +C G G C H G GC Y + C
Sbjct: 77 ADDLKCATNCVENYYNRYKHECAGTGQGACEVMARNHNGGPRGCHASGTLGYWKGVHSC 135
>AF067611-5|AAC19180.1| 145|Caenorhabditis elegans Hypothetical
protein C45G7.1 protein.
Length = 145
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = +1
Query: 163 QCEGETC-GLFRITWGYWADAGKPTINGLSPDAPDAYSSCTVDPYCAAQTVQNYMRRFGQ 339
QC C G F I Y+ D G+P A+ C D CA + NY R+
Sbjct: 20 QCMHCMCLGNFVIKLPYYIDCGEPG-KQRGESTESAWKRCADDLDCAETCMMNYYHRYKS 78
Query: 340 DCNGDGVVNC 369
CNG G+ C
Sbjct: 79 QCNGLGMSEC 88
Score = 32.3 bits (70), Expect = 0.36
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = +1
Query: 295 CAAQTVQNYMRRFGQDCNGDGVVNCYDYMAIHKKGGYGCTGELPFNYVNVFNQC 456
C A + QNY R+ C+G G+ C + H G GC Y +C
Sbjct: 88 CEA-SFQNYYHRYKSQCDGLGMGECEVFARNHNGGPTGCRNPGTLEYWQSIQKC 140
>U58747-4|AAF99902.2| 159|Caenorhabditis elegans Hypothetical
protein C55F2.2 protein.
Length = 159
Score = 35.5 bits (78), Expect = 0.039
Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 5/104 (4%)
Frame = +1
Query: 115 CLGCICQAISGCKQGLQCEGET-----CGLFRITWGYWADAGKPTINGLSPDAPDAYSSC 279
CL +C SGC L C + CG FR+ + +P + +A+ +C
Sbjct: 31 CLLAMCDQDSGCVP-LGCSVDQFDRIGCGYFRLNIYQFQQCYQPGKKDEDTEN-EAWMNC 88
Query: 280 TVDPYCAAQTVQNYMRRFGQDCNGDGVVNCYDYMAIHKKGGYGC 411
D C+A ++ +F C G C IH G GC
Sbjct: 89 AQDYQCSASCIRTLATKFRVKCYGKS--ECETIARIHDGGANGC 130
>X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein.
Length = 693
Score = 32.3 bits (70), Expect = 0.36
Identities = 26/83 (31%), Positives = 36/83 (43%)
Frame = +2
Query: 230 PLSMVSHLTLRMPTLAAL*TRTAPRRPSKTT*EDLARTATATEWSTAMTTWRSTRREATG 409
PL+ + + +PT + T P PSKTT T T TA TT ST T
Sbjct: 365 PLTTTTEVISDVPTTTVQTSTTVPTTPSKTT-ATTTTTPKPTTTETA-TTSSSTTTVTTQ 422
Query: 410 APANFLLTM*TCLTSASMSSRST 478
P T T+AS ++++T
Sbjct: 423 KPTTVTSTTTLPSTTASTTTKTT 445
>Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical
protein C29E6.1a protein.
Length = 812
Score = 29.1 bits (62), Expect = 3.4
Identities = 24/72 (33%), Positives = 31/72 (43%)
Frame = +2
Query: 263 MPTLAAL*TRTAPRRPSKTT*EDLARTATATEWSTAMTTWRSTRREATGAPANFLLTM*T 442
+PT + T P PSKTT T T TA TT ST T P T
Sbjct: 495 VPTTTVQTSTTVPTTPSKTT-ATTTTTPKPTTTETA-TTSSSTTTVTTQKPTTVTSTTTL 552
Query: 443 CLTSASMSSRST 478
T+AS ++++T
Sbjct: 553 PSTTASTTTKTT 564
>Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical
protein C29E6.1b protein.
Length = 653
Score = 29.1 bits (62), Expect = 3.4
Identities = 24/72 (33%), Positives = 31/72 (43%)
Frame = +2
Query: 263 MPTLAAL*TRTAPRRPSKTT*EDLARTATATEWSTAMTTWRSTRREATGAPANFLLTM*T 442
+PT + T P PSKTT T T TA TT ST T P T
Sbjct: 336 VPTTTVQTSTTVPTTPSKTT-ATTTTTPKPTTTETA-TTSSSTTTVTTQKPTTVTSTTTL 393
Query: 443 CLTSASMSSRST 478
T+AS ++++T
Sbjct: 394 PSTTASTTTKTT 405
>Z81479-10|CAB03945.2| 324|Caenorhabditis elegans Hypothetical
protein C34F6.4 protein.
Length = 324
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = -3
Query: 567 WKL*LTDYHKAVVGYSKFVRFSIRQSYLRSVLREDIDALVKHVYIVK 427
W L ++ V + F RF I +++RE ++ L+ H Y ++
Sbjct: 98 WTERLPAFYHGHVAFIDFQRFGIANPIYINIIREPLERLLSHYYFLR 144
>U40935-7|AAA81691.3| 338|Caenorhabditis elegans C.elegans homeobox
protein 20 protein.
Length = 338
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = -3
Query: 555 LTDYHKAVVGYSKFVRFSIR-QSYLRSVLREDIDALVKHVYIVKRKFAGAPV 403
L Y +A +++ VR ++ QS +R + ++I+ +V YI++RKF G V
Sbjct: 120 LRKYEEACNEFTQHVRSLLKDQSQVRPIAHKEIERMV---YIIQRKFNGIQV 168
>U01303-1|AAC46471.1| 338|Caenorhabditis elegans Ceh-20 protein.
Length = 338
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = -3
Query: 555 LTDYHKAVVGYSKFVRFSIR-QSYLRSVLREDIDALVKHVYIVKRKFAGAPV 403
L Y +A +++ VR ++ QS +R + ++I+ +V YI++RKF G V
Sbjct: 120 LRKYEEACNEFTQHVRSLLKDQSQVRPIAHKEIERMV---YIIQRKFNGIQV 168
>AY552606-1|AAS89253.1| 324|Caenorhabditis elegans heparan sulfate
2O-sulfotransferase protein.
Length = 324
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = -3
Query: 567 WKL*LTDYHKAVVGYSKFVRFSIRQSYLRSVLREDIDALVKHVYIVK 427
W L ++ V + F RF I +++RE ++ L+ H Y ++
Sbjct: 98 WTERLPAFYHGHVAFIDFQRFGIANPIYINIIREPLERLLSHYYFLR 144
>AF000264-2|AAC71121.1| 761|Caenorhabditis elegans Half transporter
(pgp related)protein 2 protein.
Length = 761
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = -3
Query: 441 VYIVKRKFAG---APVASLLVDRHVVIAVDHSVAVAVLAKSSHVVLDGLRGAVRVYSAAR 271
VY + R F A V S +V++ + A+ HS+ V ++ + GLRG Y+ A
Sbjct: 208 VYALARVFIPNYTAQVISDIVNKRGIQALIHSIIVLTCLTATSSLFGGLRGGCFDYATAL 267
Query: 270 VGIR 259
V +R
Sbjct: 268 VTLR 271
>Z83237-2|CAB05789.1| 258|Caenorhabditis elegans Hypothetical
protein R06B9.2 protein.
Length = 258
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 287 TRTAPRRPSKTT*EDLARTATATEWSTAMTTWRSTRREATGAPANF 424
T+T + S+T + TATA TA+ WR T + A P +
Sbjct: 57 TKTNSKGESETKTHTVHYTATAKHLDTAVPLWRKTDKAARLLPGKY 102
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 28.3 bits (60), Expect = 5.9
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +1
Query: 34 CSGFVRCCWLPXSVSPMFRN---SPLXXEVCLGCICQAISGCKQGLQCEGETCGLFRITW 204
CS F + C P S + + +P EV G C A + C +G CE GL R
Sbjct: 806 CS-FRKLCECPQDKSEISQGQCVTPRKLEVVPGASCNANTVCTKGSTCES---GLCRCQP 861
Query: 205 GYWADAG 225
GY A +G
Sbjct: 862 GYIAVSG 868
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 28.3 bits (60), Expect = 5.9
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +1
Query: 34 CSGFVRCCWLPXSVSPMFRN---SPLXXEVCLGCICQAISGCKQGLQCEGETCGLFRITW 204
CS F + C P S + + +P EV G C A + C +G CE GL R
Sbjct: 903 CS-FRKLCECPQDKSEISQGQCVTPRKLEVVPGASCNANTVCTKGSTCES---GLCRCQP 958
Query: 205 GYWADAG 225
GY A +G
Sbjct: 959 GYIAVSG 965
>Z37139-9|CAA85493.1| 396|Caenorhabditis elegans Hypothetical
protein C14B1.5 protein.
Length = 396
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Frame = +1
Query: 268 YSSCTVDPYCAAQTVQNYMRRFGQDC-----NGDGVVNCYDYMAIH 390
Y +C VD Y A + + +G C N DG+ Y ++ IH
Sbjct: 86 YGACCVDDYTAKSMGCDLLVHYGHSCLVPIQNTDGIAMLYVFVNIH 131
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,970,638
Number of Sequences: 27780
Number of extensions: 365981
Number of successful extensions: 810
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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