Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_A08
         (420 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr 1...    26   2.1  
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    25   4.8  
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce...    25   6.3  
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    24   8.4  

>SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 122 VFDTALQRFLSMKVT-QFEYFTVNKRTSLFGFFVIVVPMFTFGTLIW 259
           V  T+ +   S+K++ + +YF V    S FGFF+ VV    F  ++W
Sbjct: 172 VLYTSKRIIKSLKLSDRSDYFLV---VSGFGFFIFVVVYLLFKRIVW 215


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 280 TEDSQWRAPLQRQTLQASLITDELVHNRKYINE 378
           T  S+WR P  R +++  L  +   + R YI E
Sbjct: 249 TSSSRWRGPFGRFSIRCILWDEHDFYCRNYIKE 281


>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 399

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +2

Query: 8   SDAXLNLIKTQASRRAEMXREFLKQRTNPWKNASEAGYVFDTALQRFLSMKVTQFEYFTV 187
           SD+ +N I++  ++       F     + +       Y+  T   R+L+ KV + EY TV
Sbjct: 252 SDSSVNFIESNNTKFMPNDELFEPDGISRFSTQQARDYIQRTLGPRYLTGKVVEQEYLTV 311


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 208 WIFCYCCTHVYIWYLDMERENAA 276
           +I  YCC   +I YLD    N A
Sbjct: 31  FILSYCCVSYFINYLDRSSINNA 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,547,512
Number of Sequences: 5004
Number of extensions: 29754
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)