Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_F_A08
         (420 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0206 - 21580240-21580467,21580544-21580591,21581533-215823...    29   1.1  
09_02_0580 + 10884012-10884081,10884173-10884419,10884472-108847...    28   3.5  
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    28   3.5  
04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783...    27   4.6  
07_01_1014 + 8610060-8610227,8610573-8610950,8611037-8611081           27   6.1  
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865...    27   6.1  
01_01_0421 + 3181139-3184207                                           27   8.1  

>09_06_0206 -
           21580240-21580467,21580544-21580591,21581533-21582321,
           21582779-21582979
          Length = 421

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 71  FLKQRTNPWKNASEAGYVFDTALQRFLSMKV 163
           F+ QR   W N S     +DT L RF+++K+
Sbjct: 44  FVAQRKLGWGNFSTVWLAYDTLLNRFVALKI 74


>09_02_0580 +
           10884012-10884081,10884173-10884419,10884472-10884735,
           10885630-10886093,10888326-10888396
          Length = 371

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 65  REFLK-QRTNPWKNASEAGYVFDTALQRFLSMKVTQFEYFTVNKRTSL 205
           R +L+ Q    WKN S A  + DT+L   + + V Q     V+  TSL
Sbjct: 202 RRWLRMQLDRTWKNLSTASTIKDTSLDYAVPLPVMQTAAEAVSNETSL 249


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +2

Query: 8   SDAXLNLIKTQASRRAEMXREFLKQRTNPWKNASEAGYVFDTALQRFLSMKVTQ 169
           S + L   +T+  RRA   RE+ KQR    KN         T LQ+   ++  Q
Sbjct: 148 SKSALPRAETEEERRARKKREYEKQRAEDRKNQQMMRQSQATVLQKTQQVRAAQ 201


>04_04_1197 +
           31672019-31672325,31672431-31672740,31673334-31678335,
           31678677-31678715
          Length = 1885

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = -3

Query: 214 KSKQTSSL--VYG--KIFKLCYFHGQKPLQCCVENITSLRSVFP 95
           KS++  SL   YG  +  KLCY H   PLQ CV    S  S+FP
Sbjct: 548 KSEEWKSLQQAYGIMQALKLCYDHLSNPLQQCV----SYCSLFP 587


>07_01_1014 + 8610060-8610227,8610573-8610950,8611037-8611081
          Length = 196

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 5   LSDAXLNLIKTQASRRAEMXREFLKQRTNPWKNASEAGYVFDT 133
           L D  L L K Q  +  ++ R F+K R  P K  S   + FD+
Sbjct: 91  LMDRMLKL-KEQGLQGEQITRHFIKSRLAPIKERSRTAFEFDS 132


>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
            30286718-30287042,30287563-30287818,30287901-30288117,
            30288743-30289095,30289330-30289833,30291267-30292467,
            30292614-30292970,30293258-30293495,30294083-30295125,
            30295234-30296649,30296731-30296855,30297036-30297314,
            30297352-30297382,30298957-30299022,30299447-30299689,
            30299848-30299898,30299980-30300071,30300182-30300249,
            30300515-30300600,30300720-30300824,30300994-30301127,
            30302403-30302436,30302620-30302892,30303019-30303288,
            30303384-30303974,30304065-30304214
          Length = 3376

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 98   KNASEAGYVFDTALQRFLSMKVTQFEYFTVN 190
            ++++E GY    ALQ F+ MK   +E F+ +
Sbjct: 1163 RSSTERGYSKSRALQAFIEMKEVTYEKFSAS 1193


>01_01_0421 + 3181139-3184207
          Length = 1022

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 175 FKLCYFHGQKPLQCCVENITSLRSVFPGVCSLFQELPXH 59
           F  C  HG  P    + ++T L  +    C+LF E+P H
Sbjct: 422 FSNCGLHGTIPSS--IADLTKLTKLALYACNLFGEIPRH 458


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,256,620
Number of Sequences: 37544
Number of extensions: 165304
Number of successful extensions: 416
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)